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[185883_s_at]

Description Y24D9B.1 /REP_DB=WormBase Gene ID /WP=CE21465 /TR=Q9TYQ2 /GB=AAD12803.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.6
(-3)
A 		9
(-2)
A 		13.4
(-0.9)
A 		29.8
(3)
A 		25
B 20.6
(3)
A 		10.2
(-1.7)
A 		7.4
(-3)
A 		16.6
(1.2)
A 		13
C 13.1
(0.4)
A 		7.7
(-3)
A 		12.2
(-0.2)
A 		17.2
(3)
A 		10
avr 12.8
(-1.1) 		9
(-3) 		11
(-2) 		21.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 37.3
(-1.8)
A 		8.8
(-3)
A 		10.9
(-2.9)
A 		16.7
(-2.7)
A 		73.4
(-0.2)
A 		147.2
(3)
A 		138
B 3.4
(-3)
A 		10.2
(-2.7)
A 		14.2
(-2.5)
A 		5
(-2.9)
A 		95.2
(0.9)
A 		144.7
(3)
A 		141
C 8.9
(-3)
A 		17
(-2.6)
A 		34.3
(-1.7)
A 		23.3
(-2.3)
A 		94.6
(1.2)
A 		130.2
(3)
A 		121
avr 16.5
(-2.8) 		12
(-3) 		19.8
(-2.6) 		15
(-2.9) 		87.7
(0.5) 		140.7
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-3)
A 		2
(-2.3)
A 		3.5
(1)
A 		4.4
(3)
A 		3
B 6.6
(3)
A 		2.5
(-2)
A 		1.7
(-3)
A 		3.5
(-0.8)
A 		5
C 4.3
(3)
A 		2.2
(-3)
A 		4.3
(3)
A 		2.9
(-1)
A 		2
avr 4.2
(3) 		2.2
(-3) 		3.2
(0) 		3.6
(1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 6.9
(-2.2)
A 		3.1
(-2.9)
A 		2.4
(-3)
A 		4.2
(-2.7)
A 		22.2
(0.6)
A 		35.8
(3)
A 		33
B 1.2
(-3)
A 		3.4
(-2.7)
A 		3.5
(-2.7)
A 		1.3
(-3)
A 		38.7
(1.3)
A 		53.9
(3)
A 		53
C 3.3
(-3)
A 		5.2
(-2.7)
A 		8.7
(-2.2)
A 		4.7
(-2.8)
A 		30.6
(1.1)
A 		43.6
(3)
A 		40
avr 3.8
(-2.9) 		3.9
(-2.9) 		4.9
(-2.8) 		3.4
(-3) 		30.5
(1) 		44.4
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185883_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10853
Sequence Type Exemplar sequence
Representative Public ID Y24D9B.1 NCBI
Target Description Y24D9B.1 /REP_DB=WormBase Gene ID /WP=CE21465 /TR=Q9TYQ2 /GB=AAD12803.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070569(11), NM_068139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070569 NCBI Caenorhabditis elegans Y51H4A.13 (Y51H4A.13) mRNA, complete cds. 11/11 None
NM_068139 NCBI Caenorhabditis elegans Y24D9B.1 (Y24D9B.1) mRNA, complete cds. 11/11 None
SNAP00000000187 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16641752:16646243:-1 11/11 None
GENEFINDER00000000203 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16638403:16646243:-1 11/11 None
Y24D9B.1 ENSEMBL cdna:known chromosome:CEL140:IV:4317411:4321905:1 gene:Y24D9B.1 11/11 None
Y51H4A.13 ENSEMBL cdna:known chromosome:CEL140:IV:16640209:16646298:-1 gene:Y51H4A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4319905-4321810(+) 97.04 100.0
chrIV:16641757-16643685(-) 97.76 97.76
Public Domain and Genome References
Gene Title

Ensembl Y24D9B.1
Y51H4A.13
Entrez Gene 177197 Entrez gene
190150 Entrez gene
SwissProt Q9TYQ2 EMBL-EBI
Q9U261 EMBL-EBI
WormBase CE31635 Wormbase
CE25362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63384 Hypothetical protein Y51H4A.13 [Caenorhabditis elegans] ref|NP_502970.1| Y51H4A.13 [Caenorhabditis elegans] 0.0
blast AAD12803 Hypothetical protein Y24D9B.1 [Caenorhabditis elegans] ref|NP_500540.2| Y24D9B.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 5.8E-24
Sequence
Target Sequence 
>C. ELEGANS:185883_S_AT
atcctcaccgcctgaggtggttggtcgtggtggagtggatggaggtggacatcagcagca
gcatcagcatcagcgtcggacttcgaagcactcggcgactacggattcggttgagtcgac
tgctagtacacagtcgggagagagaactgagagctccactcaatccatagaagccgacga
ggatattgctcgcgagctcgacgctcaactcattgaagaagcccgccgtgagactgaaaa
acgtgtgaaagaagaggcggaccagagaaagaaggacgagttgctcgccaaattgtcgca
gatttttggatacgcaaagtcgattcgtgtcatgaagaagtacccaaagatgttgaccct
ctcacttcttgtcgaaaaatgcatgcaagagagtgatgaagccggagatggaggagagtt
ttcggatgtttgggcttgtgtcgccgaggagattcgggctctgccgactccgactccgac
tctgactccgactccggagctcgttgaggatttgattgacttttccgatgaaccattgat
cccgtctgttgagatgagcggccgccgtgaacagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTCACCGCCTGAGGTGGTTGGT 258 37 509 Antisense
ATCAGCGTCGGACTTCGAAGCACTC 84 29 577 Antisense
CACTCGGCGACTACGGATTCGGTTG 651 195 597 Antisense
CGGTTGAGTCGACTGCTAGTACACA 188 241 616 Antisense
CTCCACTCAATCCATAGAAGCCGAC 86 237 662 Antisense
AGCTCGACGCTCAACTCATTGAAGA 311 81 703 Antisense
GACGAGTTGCTCGCCAAATTGTCGC 204 379 783 Antisense
TTTCGGATGTTTGGGCTTGTGTCGC 543 671 928 Antisense
CTCCGACTCCGGAGCTCGTTGAGGA 372 233 994 Antisense
AACCATTGATCCCGTCTGTTGAGAT 697 147 1039 Antisense
AGATGAGCGGCCGCCGTGAACAGGA 327 65 1060 Antisense
Sequence Source Affymetrix Proprietary Database