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[185882_s_at]

Description Y71F9B.2 /REP_DB=WormBase Gene ID /WP=CE25568 /TR=Q9N4G7 /GB=AAF36018.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 83      6grp_total > 67      4grp_total > 57      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 524.8
(1.6)
P 		479.8
(-0.3)
P 		557.1
(3)
P 		416.6
(-3)
P 		141
B 378.5
(-3)
P 		593.2
(2.6)
P 		610
(3)
P 		428.1
(-1.7)
P 		232
C 404.1
(-3)
P 		498.3
(3)
P 		456.4
(0.3)
P 		442.6
(-0.5)
P 		94
avr 435.8
(-2.6) 		523.8
(2.1) 		541.2
(3) 		429.1
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 439.3
(-0.7)
P 		406.6
(-1.9)
P 		535.5
(3)
P 		377.4
(-3)
P 		433.3
(-0.9)
P 		494.9
(1.5)
P 		158
B 489.6
(-1.7)
P 		421.1
(-3)
P 		509.8
(-1.3)
P 		500.8
(-1.5)
P 		443.6
(-2.6)
P 		734.8
(3)
P 		314
C 383.6
(-3)
P 		389.3
(-2.9)
P 		454.7
(-2.1)
P 		446.7
(-2.2)
P 		513.6
(-1.3)
P 		845.2
(3)
P 		462
avr 437.5
(-2.3) 		405.7
(-3) 		500
(-1) 		441.6
(-2.2) 		463.5
(-1.8) 		691.6
(3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 191.1
(3)
P 		104.2
(-1)
P 		145.6
(0.9)
P 		61
(-3)
P 		130
B 120.7
(0.2)
P 		146.5
(3)
P 		141.4
(2.4)
P 		91.2
(-3)
P 		55
C 133.8
(1.2)
P 		143.3
(1.9)
P 		159.1
(3)
P 		74.6
(-3)
P 		85
avr 148.5
(3) 		131.3
(1.6) 		148.7
(3) 		75.6
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 81
(-3)
P 		144.6
(3)
P 		116.6
(0.4)
P 		95.7
(-1.6)
P 		130.7
(1.7)
P 		120.5
(0.7)
P 		64
B 170.4
(-1.1)
P 		140.2
(-2.3)
P 		123.8
(-3)
P 		132.6
(-2.6)
P 		180.2
(-0.7)
P 		274
(3)
P 		150
C 142.2
(-1.4)
P 		118.8
(-2.1)
P 		115.7
(-2.2)
P 		89.8
(-3)
P 		166.2
(-0.6)
P 		282.9
(3)
P 		193
avr 131.2
(-1.7) 		134.5
(-1.6) 		118.7
(-2.4) 		106
(-3) 		159
(-0.3) 		225.8
(3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185882_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.318
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.2 NCBI
Target Description Y71F9B.2 /REP_DB=WormBase Gene ID /WP=CE25568 /TR=Q9N4G7 /GB=AAF36018.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058633 NCBI Caenorhabditis elegans Y71F9B.2 (Y71F9B.2) mRNA, complete cds. 11/11 A 
SNAP00000013306 ENSEMBL cdna:SNAP chromosome:CEL140:I:2731565:2735314:1 11/11 None
Y71F9B.2 ENSEMBL cdna:known chromosome:CEL140:I:2731565:2735314:1 gene:Y71F9B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2731564-2735314(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.2
Entrez Gene 171836 Entrez gene
SwissProt Q9N4G7 EMBL-EBI
WormBase CE28809 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252426_AT expressed protein at
CANINE:1596074_AT similar to Y71F9B.2 cfa
CANINE_2:CFA.14487.1.A1_S_AT similar to Y71F9B.2 cfa
CANINE_2:CFAAFFX.8424.1.S1_AT similar to Y71F9B.2 cfa
DROSOPHILA_2:1629725_AT dm
CHICKEN:GGAAFFX.26365.1.S1_AT similar to hypothetical protein BC015088 gga
CHICKEN:GGAAFFX.26365.2.S1_S_AT similar to hypothetical protein BC015088 gga
HU35KSUBB:RC_R60166_AT hypothetical protein BC015088 hs
U133_X3P:HS.171914.0.S1_3P_X_AT hypothetical protein BC015088 hs
U133_X3P:HS.171914.0.S1_3P_S_AT hypothetical protein BC015088 hs
U133_X3P:HS.171914.0.S1_3P_A_AT hypothetical protein BC015088 hs
HG-U133_PLUS_2:226815_AT hypothetical protein BC015088 hs
HG-U133B:226815_AT hypothetical protein BC015088 hs
HG-U133_PLUS_2:234697_X_AT hypothetical protein BC015088 hs
HG-U133B:234697_X_AT hypothetical protein BC015088 hs
HG-U95B:54775_AT hypothetical protein BC015088 hs
HG-U133_PLUS_2:231958_AT Hypothetical protein BC015088 hs
HG-U133B:231958_AT Hypothetical protein BC015088 hs
U133_X3P:HS.171914.1.S1_3P_X_AT Hypothetical protein BC015088 hs
U133_X3P:HS.171914.1.S1_3P_AT Hypothetical protein BC015088 hs
HG-U95C:65490_AT Hypothetical protein BC015088 hs
HG-U95D:86736_AT Hypothetical protein BC015088 hs
MG-U74AV2:162417_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
MG-U74AV2:160723_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
MU19KSUBA:TC15175_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
MU19KSUBA:TC21268_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
Protein Similarities
Method ID Description E-Value
blast AAF36018 Hypothetical protein Y71F9B.2 [Caenorhabditis elegans] ref|NP_491034.1| Y71F9B.2 [Caenorhabditis elegans] 1.0E-174
blast CAE60498 Hypothetical protein CBG04116 [Caenorhabditis briggsae] 1.0E-162
blast AAH75154 MGC82002 protein [Xenopus laevis] 8.0E-55
Sequence
Target Sequence 
>C. ELEGANS:185882_S_AT
cgcttgctcaccgacatgatgtggctgcgaccgttgaaaccgcaatcggcggaatcatcc
gaccagtctccctgtctcaaaccgcgaagaacgccttctcggccggagtcacccgttcaa
tcatctacagtatggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTGCTCACCGACATGATGTGGC 629 253 671 Antisense
TCACCGACATGATGTGGCTGCGACC 393 625 678 Antisense
TGATGTGGCTGCGACCGTTGAAACC 60 567 687 Antisense
GTGGCTGCGACCGTTGAAACCGCAA 77 493 691 Antisense
CGACCGTTGAAACCGCAATCGGCGG 268 233 698 Antisense
GCAATCGGCGGAATCATCCGACCAG 672 321 712 Antisense
ATCGGCGGAATCATCCGACCAGTCT 115 35 715 Antisense
CCCTGTCTCAAACCGCGAAGAACGC 76 259 740 Antisense
TCAAACCGCGAAGAACGCCTTCTCG 494 627 747 Antisense
TCACCCGTTCAATCATCTACAGTAT 104 625 779 Antisense
CCGTTCAATCATCTACAGTATGGCA 120 265 783 Antisense
Sequence Source Affymetrix Proprietary Database