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[185881_at]

Description Y71F9B.2 /REP_DB=WormBase Gene ID /WP=CE25568 /TR=Q9N4G7 /GB=AAF36018.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_high_8_8 > 63      6grp_highest_nonorm > 81      6grp_total > 65      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 268.1
(-0.3)
P 		172.2
(-3)
P 		382
(3)
P 		193.6
(-2.4)
A 		210
B 234.2
(2.3)
P 		210.4
(-3)
P 		236.7
(2.9)
P 		237.2
(3)
P 		27
C 250.9
(-2.1)
P 		358.4
(2)
P 		382.9
(3)
P 		228.2
(-3)
M 		155
avr 251.1
(-1.4) 		247
(-1.6) 		333.9
(3) 		219.7
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 191
(-3)
P 		231.5
(-1.3)
P 		192
(-3)
P 		256.4
(-0.2)
P 		331.9
(3)
P 		317.6
(2.4)
P 		141
B 189.5
(-3)
P 		316.7
(0.2)
P 		429.9
(3)
P 		197.5
(-2.8)
P 		250.6
(-1.5)
P 		332.2
(0.6)
P 		240
C 226.4
(-2.8)
P 		222.6
(-3)
P 		320.8
(2.8)
P 		294.6
(1.2)
P 		248.8
(-1.5)
P 		324.5
(3)
P 		102
avr 202.3
(-3) 		256.9
(-0.3) 		314.2
(2.5) 		249.5
(-0.7) 		277.1
(0.7) 		324.8
(3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 97.6
(2.8)
P 		37.4
(-2.2)
P 		99.9
(3)
P 		28.3
(-3)
A 		72
B 74.7
(3)
P 		52
(-2.6)
P 		54.9
(-1.9)
P 		50.5
(-3)
P 		24
C 83.1
(-0.2)
P 		103
(1.1)
P 		133.5
(3)
P 		38.5
(-3)
M 		95
avr 85.1
(1.8) 		64.1
(-0.4) 		96.1
(3) 		39.1
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 35.2
(-3)
P 		82.3
(1.3)
P 		41.8
(-2.4)
P 		65
(-0.2)
P 		100.2
(3)
P 		77.3
(0.9)
P 		65
B 65.9
(-1.9)
P 		105.4
(1.4)
P 		104.4
(1.4)
P 		52.3
(-3)
P 		101.8
(1.1)
P 		123.9
(3)
P 		72
C 83.9
(0)
P 		67.9
(-1.9)
P 		81.7
(-0.3)
P 		59.2
(-3)
P 		80.5
(-0.4)
P 		108.6
(3)
P 		49
avr 61.7
(-2.6) 		85.2
(0.6) 		76
(-0.7) 		58.8
(-3) 		94.2
(1.8) 		103.3
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.318
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.2 NCBI
Target Description Y71F9B.2 /REP_DB=WormBase Gene ID /WP=CE25568 /TR=Q9N4G7 /GB=AAF36018.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058633 NCBI Caenorhabditis elegans Y71F9B.2 (Y71F9B.2) mRNA, complete cds. 11/11 A 
SNAP00000013306 ENSEMBL cdna:SNAP chromosome:CEL140:I:2731565:2735314:1 11/11 None
GENEFINDER00000013352 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2731565:2733440:1 10/11 None
Y71F9B.2 ENSEMBL cdna:known chromosome:CEL140:I:2731565:2735314:1 gene:Y71F9B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2731564-2735314(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.2
Entrez Gene 171836 Entrez gene
SwissProt Q9N4G7 EMBL-EBI
WormBase CE28809 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252426_AT expressed protein at
CANINE:1596074_AT similar to Y71F9B.2 cfa
CANINE_2:CFA.14487.1.A1_S_AT similar to Y71F9B.2 cfa
CANINE_2:CFAAFFX.8424.1.S1_AT similar to Y71F9B.2 cfa
DROSOPHILA_2:1629725_AT dm
CHICKEN:GGAAFFX.26365.1.S1_AT similar to hypothetical protein BC015088 gga
CHICKEN:GGAAFFX.26365.2.S1_S_AT similar to hypothetical protein BC015088 gga
HU35KSUBB:RC_R60166_AT hypothetical protein BC015088 hs
U133_X3P:HS.171914.0.S1_3P_X_AT hypothetical protein BC015088 hs
U133_X3P:HS.171914.0.S1_3P_S_AT hypothetical protein BC015088 hs
U133_X3P:HS.171914.0.S1_3P_A_AT hypothetical protein BC015088 hs
HG-U133_PLUS_2:226815_AT hypothetical protein BC015088 hs
HG-U133B:226815_AT hypothetical protein BC015088 hs
HG-U133_PLUS_2:234697_X_AT hypothetical protein BC015088 hs
HG-U133B:234697_X_AT hypothetical protein BC015088 hs
HG-U95B:54775_AT hypothetical protein BC015088 hs
HG-U133_PLUS_2:231958_AT Hypothetical protein BC015088 hs
HG-U133B:231958_AT Hypothetical protein BC015088 hs
U133_X3P:HS.171914.1.S1_3P_X_AT Hypothetical protein BC015088 hs
U133_X3P:HS.171914.1.S1_3P_AT Hypothetical protein BC015088 hs
HG-U95C:65490_AT Hypothetical protein BC015088 hs
HG-U95D:86736_AT Hypothetical protein BC015088 hs
MG-U74AV2:162417_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
MG-U74AV2:160723_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
MU19KSUBA:TC15175_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
MU19KSUBA:TC21268_AT 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110089I09 product:hypothetical protein, full insert sequence mm
Protein Similarities
Method ID Description E-Value
blast AAF36018 Hypothetical protein Y71F9B.2 [Caenorhabditis elegans] ref|NP_491034.1| Y71F9B.2 [Caenorhabditis elegans] 1.0E-174
blast CAE60498 Hypothetical protein CBG04116 [Caenorhabditis briggsae] 1.0E-162
blast AAF36018 Hypothetical protein Y71F9B.2 [Caenorhabditis elegans] ref|NP_491034.1| Y71F9B.2 [Caenorhabditis elegans] 1.0E-143
blast CAE60498 Hypothetical protein CBG04116 [Caenorhabditis briggsae] 1.0E-132
blast AAH75154 MGC82002 protein [Xenopus laevis] 8.0E-55
Sequence
Target Sequence 
>C. ELEGANS:185881_AT
attttgcggctcgtgtctattacaatactcatgtaaaagtcgggaagcggaagatcaagt
acggagtgatttcgtacgagaatgtgaagcaggatcttctggattggaggtggatttata
tttctgggcggctacacaagccggtactggaggtgatcaagccgcggcaggatatgtgtg
atctggtgactgagaatcgtagatcagcgcttcattcatcgcttcttctacttccagaat
cttttacacttaagcaattatttcataaaatcgtcgggctctcttatactggagattttc
gaatggtcgttggagaggataagaataaaatcaataaaatcgtcgagggaaattacgagg
agcttctcagagtctacgagccacttatgaacgatgatgctcgactgtcggtaatctttt
cgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTGCGGCTCGTGTCTATTACAA 569 13 251 Antisense
GTGGATTTATATTTCTGGGCGGCTA 507 489 360 Antisense
TGGGCGGCTACACAAGCCGGTACTG 93 289 375 Antisense
GTACTGGAGGTGATCAAGCCGCGGC 300 459 394 Antisense
AAGCCGCGGCAGGATATGTGTGATC 540 149 409 Antisense
AGATCAGCGCTTCATTCATCGCTTC 464 65 451 Antisense
GCTTCTTCTACTTCCAGAATCTTTT 663 305 471 Antisense
ATAAAATCGTCGGGCTCTCTTATAC 633 23 515 Antisense
GGAGCTTCTCAGAGTCTACGAGCCA 419 521 609 Antisense
GTCTACGAGCCACTTATGAACGATG 707 469 622 Antisense
GCTCGACTGTCGGTAATCTTTTCGC 268 299 649 Antisense
Sequence Source Affymetrix Proprietary Database