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[185880_s_at]

Description Y53C12A.3 /REP_DB=WormBase Gene ID /WP=CE14888 /TR=O18212 /GB=CAB16487.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 368.2
(-1.7)
P 		288.3
(-3)
P 		465
(-0.1)
P 		651.4
(3)
P 		363
B 426.9
(-1)
P 		283.9
(-3)
P 		368.5
(-1.8)
P 		714.9
(3)
P 		431
C 443.1
(2.3)
P 		340.2
(-3)
P 		344.2
(-2.8)
P 		456.2
(3)
P 		116
avr 412.7
(-0.9) 		304.1
(-3) 		392.6
(-1.2) 		607.5
(3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 488.3
(3)
P 		357.3
(-0.8)
P 		376.7
(-0.2)
P 		376.6
(-0.2)
P 		281.8
(-3)
P 		369.7
(-0.4)
P 		207
B 367.5
(0.9)
P 		272.9
(-2.1)
P 		248.4
(-2.9)
P 		243.7
(-3)
P 		406.5
(2.1)
P 		433.6
(3)
P 		190
C 387.5
(-0.1)
P 		317.6
(-2.8)
P 		323.9
(-2.5)
P 		312
(-3)
P 		398.4
(0.3)
P 		469.4
(3)
P 		157
avr 414.4
(2.5) 		315.9
(-2.7) 		316.3
(-2.7) 		310.8
(-3) 		362.2
(-0.3) 		424.2
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 134.1
(3)
P 		62.6
(-3)
P 		121.6
(2)
P 		95.4
(-0.2)
P 		72
B 136.1
(1.8)
P 		70.1
(-3)
P 		85.4
(-1.9)
P 		152.3
(3)
P 		82
C 146.7
(3)
P 		97.8
(-1.2)
P 		120
(0.7)
P 		76.9
(-3)
P 		70
avr 139
(3) 		76.8
(-3) 		109
(0.1) 		108.2
(0) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 90
(-1.9)
P 		127.1
(3)
P 		82
(-3)
P 		95.5
(-1.2)
P 		85
(-2.6)
P 		90
(-1.9)
P 		45
B 127.9
(0.9)
P 		90.9
(-1.2)
P 		60.3
(-3)
P 		64.5
(-2.8)
P 		165.2
(3)
P 		161.7
(2.8)
P 		105
C 143.6
(2.1)
P 		96.9
(-0.8)
P 		82.4
(-1.8)
P 		62.8
(-3)
P 		128.9
(1.2)
P 		157.1
(3)
P 		94
avr 120.5
(1.5) 		105
(-0) 		74.9
(-2.9) 		74.3
(-3) 		126.4
(2) 		136.3
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185880_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3937
Sequence Type Exemplar sequence
Representative Public ID Y53C12A.3 NCBI
Target Description Y53C12A.3 /REP_DB=WormBase Gene ID /WP=CE14888 /TR=O18212 /GB=CAB16487.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063692 NCBI Caenorhabditis elegans Y53C12A.3 (Y53C12A.3) mRNA, complete cds. 11/11 None
SNAP00000043897 ENSEMBL cdna:SNAP chromosome:CEL140:II:9703932:9704691:-1 11/11 None
GENEFINDER00000043908 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9701869:9704691:-1 11/11 None
Y53C12A.3 ENSEMBL cdna:known chromosome:CEL140:II:9703723:9706299:-1 gene:Y53C12A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9703928-9706296(-) 99.52 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53C12A.3
Entrez Gene 174528 Entrez gene
SwissProt O18212 EMBL-EBI
WormBase CE14888 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1595248_AT similar to natural killer cell-specific antigen KLIP1 cfa
CANINE:1583780_AT similar to natural killer cell-specific antigen KLIP1 cfa
CANINE_2:CFA.6268.1.A1_X_AT similar to natural killer cell-specific antigen KLIP1 cfa
CANINE_2:CFA.7668.1.A1_AT similar to natural killer cell-specific antigen KLIP1 cfa
CANINE_2:CFAAFFX.3724.1.S1_AT similar to natural killer cell-specific antigen KLIP1 cfa
CANINE_2:CFAAFFX.3724.1.S1_S_AT similar to natural killer cell-specific antigen KLIP1 cfa
CHICKEN:GGA.5769.1.S1_AT Yip1 domain family, member 3 gga
HG-U133_PLUS_2:216338_S_AT Yip1 domain family, member 3 hs
HG-U133A_2:216338_S_AT Yip1 domain family, member 3 hs
HG-U133A:216338_S_AT Yip1 domain family, member 3 hs
HU35KSUBA:RC_AA464722_S_AT Yip1 domain family, member 3 hs
HU35KSUBA:AA464013_AT Yip1 domain family, member 3 hs
U133_X3P:HS.107747.1.A1_3P_A_AT Yip1 domain family, member 3 hs
HG-U95AV2:38697_AT Yip1 domain family, member 3 hs
MU11KSUBA:AA155379_S_AT Yip1 domain family, member 3 mm
MG-U74AV2:160211_AT Yip1 domain family, member 3 mm
MOE430A:1451284_AT Yip1 domain family, member 3 mm
MOUSE430A_2:1451284_AT Yip1 domain family, member 3 mm
MOUSE430_2:1451284_AT Yip1 domain family, member 3 mm
MOE430B:1444012_AT Yip1 domain family, member 3 mm
MOUSE430_2:1444012_AT Yip1 domain family, member 3 mm
MU19KSUBC:TC38441_AT Yip1 domain family, member 3 (Yipf3), mRNA mm
MU19KSUBC:TC39284_AT Yip1 domain family, member 3 (Yipf3), mRNA mm
RAT230_2:1389035_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RAE230A:1389035_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RG-U34A:RC_AA800024_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RG-U34B:RC_AI008867_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RAE230A:1374439_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RAT230_2:1374439_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RAE230B:1383837_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RAT230_2:1383837_AT similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
RG-U34C:RC_AI102932_AT Similar to DNA segment, Chr 17, Wayne State University 94, expressed (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB16487 Hypothetical protein Y53C12A.3 [Caenorhabditis elegans] ref|NP_496093.1| Y53C12A.3 [Caenorhabditis elegans] 0.0
blast CAE57988 Hypothetical protein CBG01051 [Caenorhabditis briggsae] 0.0
blast CAB16486 Hypothetical protein Y53C12A.4 [Caenorhabditis elegans] ref|NP_496092.1| Y53C12A.4 [Caenorhabditis elegans] sp|O18211|MO25M_CAEEL Hypothetical MO25-like protein Y53C12A.4 in chromosome II 1.0E-173
blast CAE57989 Hypothetical protein CBG01052 [Caenorhabditis briggsae] 1.0E-167
blast CAB16487 Hypothetical protein Y53C12A.3 [Caenorhabditis elegans] ref|NP_496093.1| Y53C12A.3 [Caenorhabditis elegans] 1.0E-138
blast CAB16487 Hypothetical protein Y53C12A.3 [Caenorhabditis elegans] ref|NP_496093.1| Y53C12A.3 [Caenorhabditis elegans] 1.0E-131
blast CAE57988 Hypothetical protein CBG01051 [Caenorhabditis briggsae] 1.0E-115
blast XP_787673 PREDICTED: similar to CG2006-PA [Strongylocentrotus purpuratus] 7.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR005636 EMBL-EBI DTW domain 1.3E-80
Pfam IPR004892 EMBL-EBI Mo25 1.6E-31
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Pfam IPR005636 EMBL-EBI DTW domain 1.3E-80
Pfam IPR006977 EMBL-EBI Protein of unknown function DUF649 9.0E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496093.1 5 123-145,160-182,189-211,221-240,252-274
Y53C12A.3 5 123-145,160-182,189-211,221-240,252-274
Sequence
Target Sequence 
>C. ELEGANS:185880_S_AT
ttatgattgtcgaactcctatgcccggagtttttacgccaactgtaaagcttccctgtgc
cgtcgacatcgtcaagcatccaatggagaaaaatagtaaaagcagtgctcttcactgtaa
aattgtggctcctgatcaaactcgagtctttgattatccaaatgttcatgattattcaca
agattctgaagatgaacggcaaggaactgcaatcatttttccgagtaaatctgcaatttc
tgttgaggaatttgtaaaaacaagaggaccgatcaaacgaattgttgtattagattgcac
gtggtttcaagttggtgttatgcagaagacacctcaaattcaaggactccaacacgtatc
tcttcaatcataccgtactgcattctggcggcctcaacacaacgttcccgaaacgggtct
cgccacgatcgaagcaatttattattcgcttagagaatatcaagaattgggtctcggacg
gaaatatagtggagaattcgatgatcttctttattggtttttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGATTGTCGAACTCCTATGCCC 274 679 1086 Antisense
TCCTATGCCCGGAGTTTTTACGCCA 704 571 1101 Antisense
TACGCCAACTGTAAAGCTTCCCTGT 536 647 1119 Antisense
GTCGACATCGTCAAGCATCCAATGG 417 473 1147 Antisense
GTGGCTCCTGATCAAACTCGAGTCT 382 491 1210 Antisense
GAACTGCAATCATTTTTCCGAGTAA 191 349 1289 Antisense
TTCAAGGACTCCAACACGTATCTCT 608 685 1424 Antisense
ATCTCTTCAATCATACCGTACTGCA 75 33 1443 Antisense
TCATACCGTACTGCATTCTGGCGGC 504 619 1453 Antisense
GTCTCGCCACGATCGAAGCAATTTA 101 471 1502 Antisense
GATGATCTTCTTTATTGGTTTTTCC 240 411 1585 Antisense
Sequence Source Affymetrix Proprietary Database