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[185879_at]

Description F55G1.15 /REP_DB=WormBase Gene ID /WP=CE07291 /TR=Q20854 /GB=AAB00655.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 32      6grp_total > 12      4grp_total > 47      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 282.7
(3)
P 		83.6
(-2.3)
P 		56.5
(-3)
A 		108.7
(-1.6)
M 		226
B 361.2
(3)
P 		40.3
(-3)
P 		65.9
(-2.5)
P 		68.3
(-2.5)
P 		321
C 272.8
(3)
P 		79.8
(-2.6)
P 		65.6
(-3)
P 		86.6
(-2.4)
P 		207
avr 305.6
(3) 		67.9
(-2.9) 		62.7
(-3) 		87.9
(-2.4) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 63.9
(-1.5)
A 		146.7
(3)
P 		65.6
(-1.4)
P 		47.4
(-2.4)
M 		44.8
(-2.5)
A 		36.1
(-3)
A 		111
B 71.8
(1.1)
P 		92.8
(3)
P 		54.3
(-0.6)
P 		72
(1.1)
P 		43.4
(-1.6)
P 		28.1
(-3)
A 		65
C 97.3
(1.7)
P 		114.7
(2.9)
P 		115.7
(3)
P 		104.2
(2.2)
P 		42.8
(-2)
P 		27.8
(-3)
A 		88
avr 77.7
(0.2) 		118.1
(3) 		78.5
(0.3) 		74.5
(0) 		43.7
(-2.1) 		30.7
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 102.9
(3)
P 		18.1
(-2.8)
P 		14.8
(-3)
A 		15.9
(-2.9)
M 		88
B 115.2
(3)
P 		9.9
(-3)
P 		15.3
(-2.7)
P 		14.5
(-2.7)
P 		105
C 90.3
(3)
P 		22.9
(-2.3)
P 		22.9
(-2.3)
P 		14.6
(-3)
P 		76
avr 102.8
(3) 		17
(-2.9) 		17.7
(-2.8) 		15
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 11.8
(-2.6)
A 		52.2
(3)
P 		14.3
(-2.2)
P 		12
(-2.6)
M 		13.5
(-2.4)
A 		8.8
(-3)
A 		43
B 25
(1.3)
P 		30.9
(3)
P 		13.2
(-2.2)
P 		19.1
(-0.5)
P 		17.6
(-0.9)
P 		10.5
(-3)
A 		20
C 36.1
(3)
P 		35
(2.8)
P 		29.4
(1.5)
P 		20.9
(-0.4)
P 		13.8
(-2)
P 		9.3
(-3)
A 		27
avr 24.3
(-0) 		39.4
(3) 		19
(-1.1) 		17.3
(-1.4) 		15
(-1.9) 		9.5
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10039
Sequence Type Exemplar sequence
Representative Public ID F55G1.15 NCBI
Target Description F55G1.15 /REP_DB=WormBase Gene ID /WP=CE07291 /TR=Q20854 /GB=AAB00655.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005176 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7493827:7501286:-1 11/11 None
GENEFINDER00000005182 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7493827:7501286:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7500023-7501255(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00653 Hypothetical protein F55G1.13 [Caenorhabditis elegans] ref|NP_501207.1| F55G1.13 [Caenorhabditis elegans] 0.0
blast CAE61899 Hypothetical protein CBG05890 [Caenorhabditis briggsae] 0.0
blast AAB00655 Hypothetical protein F55G1.15 [Caenorhabditis elegans] ref|NP_501209.3| F55G1.15 [Caenorhabditis elegans] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-9
Pfam IPR006209 EMBL-EBI EGF-like domain 8.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.9E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 9.5E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000005176 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1407-1438
GENEFINDER00000005182 11 24-46,53-75,95-117,137-159,174-196,242-264,319-341,362-384,394-416,473-495,1419-1450
Sequence
Target Sequence 
>C. ELEGANS:185879_AT
acttccaaaacttgatgaccctcatgaaataccagatccagcacttatcggagcaattgc
tttaactcttggaattatgctcggatatctttattttatagtttttgattacgcttttca
aagttgcgacaaattagtagatgcactttatccatctgaactatttattgaagcaattta
tgatgttttaatggcaacattctcaggattatcacttatttatattctgcatcgaagatt
ttatggtgcaattagttcgaatttggataaagttggacgactcttcatcaatattacttt
tgctgttgtttggatgaaagttgtaatttacaaaggatatttgagtcatcaggaattgtg
tcaaagaaaagagcttgaaggttattggtgtcccgtgatcaaacgacattatgaatgtaa
tccagcatccgaacttcatggaactcagaaaatgtggtattacataaacaaaggacttct
tgcttcgtcaatcatctcatgtgcttctgaattctttccaattcttcttgtcactcattg
gttagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCAAAACTTGATGACCCTCAT 11 103 192 Antisense
GACCCTCATGAAATACCAGATCCAG 46 383 208 Antisense
TGCACTTTATCCATCTGAACTATTT 505 577 333 Antisense
GGCAACATTCTCAGGATTATCACTT 394 535 384 Antisense
GGACGACTCTTCATCAATATTACTT 129 525 466 Antisense
GAAGGTTATTGGTGTCCCGTGATCA 518 333 568 Antisense
GTAATCCAGCATCCGAACTTCATGG 143 461 608 Antisense
AACAAAGGACTTCTTGCTTCGTCAA 282 135 658 Antisense
GCTTCGTCAATCATCTCATGTGCTT 133 307 673 Antisense
CATGTGCTTCTGAATTCTTTCCAAT 493 209 689 Antisense
CTTCTTGTCACTCATTGGTTAGCAT 89 221 715 Antisense
Sequence Source Affymetrix Proprietary Database