[Home] | [Total List]

[185877_s_at] phosphodiesterase

Description Y40C5A.5 /REP_DB=WormBase Gene ID /WP=CE24259 /TR=Q9N3Y6 /GB=AAF60540.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 36      6grp_total > 63      4grp_total > 04      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5134
1 2 3 4 range
A 3731.7
(-1.1)
P 		2602.5
(-2.7)
P 		2383
(-3)
P 		6534.5
(3)
P 		4152
B 3642.1
(-1)
P 		2373.9
(-2.7)
P 		2154.4
(-3)
P 		6532.3
(3)
P 		4378
C 3257
(-2.1)
P 		2522.9
(-3)
P 		2560.3
(-3)
P 		7288.2
(3)
P 		4765
avr 3543.6
(-1.4) 		2499.8
(-2.8) 		2365.9
(-3) 		6785
(3) 		4419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2709
1 2 3 4 5 6 range
A 3718
(-3)
P 		4077.3
(-2)
P 		5808.2
(2.8)
P 		5867.6
(3)
P 		4169.6
(-1.7)
P 		3970.8
(-2.3)
P 		2150
B 3281.8
(-3)
P 		4754.6
(1.2)
P 		5371
(3)
P 		5266.5
(2.7)
P 		3606
(-2.1)
P 		4432.6
(0.3)
P 		2089
C 3158.9
(-3)
P 		4402.7
(-0.1)
P 		5092.9
(1.5)
P 		5758.8
(3)
P 		4070.9
(-0.9)
P 		4875.8
(1)
P 		2600
avr 3386.2
(-3) 		4411.5
(-0.3) 		5424
(2.4) 		5631
(3) 		3948.8
(-1.5) 		4426.4
(-0.2) 		2245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 893
1 2 3 4 range
A 1358.7
(3)
P 		564.9
(-3)
P 		623
(-2.6)
P 		956.5
(-0)
P 		794
B 1161.4
(1.5)
P 		586.3
(-2.4)
P 		499.2
(-3)
P 		1392
(3)
P 		893
C 1078.1
(1.2)
P 		725.3
(-3)
P 		892.3
(-1)
P 		1228.9
(3)
P 		504
avr 1199.4
(3) 		625.5
(-3) 		671.5
(-2.5) 		1192.5
(2.9) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 968
1 2 3 4 5 6 range
A 685.4
(-3)
P 		1450.1
(2.7)
P 		1264.9
(1.3)
P 		1488.1
(3)
P 		1258.2
(1.3)
P 		966.8
(-0.9)
P 		803
B 1141.9
(-3)
P 		1582.6
(2.2)
P 		1304.2
(-1.1)
P 		1394.9
(-0)
P 		1465.1
(0.8)
P 		1652.9
(3)
P 		511
C 1170.9
(-2.8)
P 		1343.4
(-0.7)
P 		1296.2
(-1.3)
P 		1158.1
(-3)
P 		1317.3
(-1)
P 		1632.2
(3)
P 		474
avr 999.4
(-3) 		1458.7
(3) 		1288.4
(0.8) 		1347
(1.5) 		1346.9
(1.5) 		1417.3
(2.5) 		459
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185877_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8694
Sequence Type Exemplar sequence
Representative Public ID Y40C5A.5 NCBI
Target Description Y40C5A.5 /REP_DB=WormBase Gene ID /WP=CE24259 /TR=Q9N3Y6 /GB=AAF60540.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068775 NCBI Caenorhabditis elegans T12B3.3 (phosphodiesterase) mRNA, complete cds. 11/11 A 
SNAP00000023938 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7375156:7376523:1 11/11 None
GENEFINDER00000023944 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7375156:7376523:1 11/11 None
SNAP00000028105 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7363960:7365070:-1 11/11 None
GENEFINDER00000028106 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7361837:7365070:-1 11/11 None
T12B3.3 ENSEMBL cdna:known chromosome:CEL140:IV:7375156:7376611:1 gene:T12B3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171378 6/11 Cross Hyb Matching Probes None
Y40C5A.4a 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7375161-7376268(+) 96.54 96.54
chrIV:7363882-7365076(-) 96.77 100.0
Public Domain and Genome References
Gene Title phosphodiesterase
Ensembl T12B3.3
Entrez Gene 177509 Entrez gene
SwissProt Q9UAW8 EMBL-EBI
WormBase CE21178 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604206_AT similar to membrane interacting protein of RGS16 cfa
CANINE:1585310_AT similar to membrane interacting protein of RGS16 cfa
CANINE_2:CFA.10052.1.S1_AT similar to membrane interacting protein of RGS16 cfa
CANINE_2:CFA.13044.1.A1_AT similar to membrane interacting protein of RGS16 cfa
CANINE_2:CFA.13044.1.A1_S_AT similar to membrane interacting protein of RGS16 cfa
CANINE_2:CFAAFFX.27702.1.S1_S_AT similar to membrane interacting protein of RGS16 cfa
CHICKEN:GGA.8868.1.S1_AT similar to membrane interacting protein of RGS16 gga
HU35KSUBA:RC_AA055048_AT membrane interacting protein of RGS16 hs
HU35KSUBA:N56415_S_AT membrane interacting protein of RGS16 hs
HU35KSUBC:RC_AA598405_AT membrane interacting protein of RGS16 hs
HU35KSUBD:RC_AA243501_AT membrane interacting protein of RGS16 hs
HG-U133A:202593_S_AT membrane interacting protein of RGS16 hs
HG-U133_PLUS_2:202593_S_AT membrane interacting protein of RGS16 hs
HG-FOCUS:202593_S_AT membrane interacting protein of RGS16 hs
HG-U133A_2:202593_S_AT membrane interacting protein of RGS16 hs
U133_X3P:G7706616_3P_A_AT membrane interacting protein of RGS16 hs
U133_X3P:HS.183684.1.A1_3P_AT membrane interacting protein of RGS16 hs
HG-U133_PLUS_2:226214_AT membrane interacting protein of RGS16 hs
HG-U133B:226214_AT membrane interacting protein of RGS16 hs
HG-U95AV2:41417_AT membrane interacting protein of RGS16 hs
HG-U95B:45490_S_AT membrane interacting protein of RGS16 hs
HG-U95C:65507_AT membrane interacting protein of RGS16 hs
MG-U74AV2:96905_AT membrane interacting protein of RGS16 mm
MOE430A:1418444_A_AT membrane interacting protein of RGS16 mm
MOUSE430A_2:1418444_A_AT membrane interacting protein of RGS16 mm
MOUSE430_2:1418444_A_AT membrane interacting protein of RGS16 mm
MU19KSUBA:TC20742_AT Membrane interacting protein of RGS16, mRNA (cDNA clone MGC:6768 IMAGE:3601420) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6071 glycerol metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8889 glycerophosphodiester phosphodiesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14735 Hypothetical protein T12B3.3 [Caenorhabditis elegans] ref|NP_501176.1| T12B3.3 [Caenorhabditis elegans] 0.0
blast CAE61869 Hypothetical protein CBG05849 [Caenorhabditis briggsae] 1.0E-176
blast CAE61869 Hypothetical protein CBG05849 [Caenorhabditis briggsae] 1.0E-173
blast AAD14735 Hypothetical protein T12B3.3 [Caenorhabditis elegans] ref|NP_501176.1| T12B3.3 [Caenorhabditis elegans] 1.0E-153
blast AAD14735 Hypothetical protein T12B3.3 [Caenorhabditis elegans] ref|NP_501176.1| T12B3.3 [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 3.7E-88
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 8.4E-89
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 8.9E-67
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 3.3E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501176.1 1 13-35
T12B3.3 1 13-35
SNAP00000023938 1 13-35
GENEFINDER00000023944 1 13-35
SNAP00000028105 1 13-35
GENEFINDER00000028106 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:185877_S_AT
aaacccgtgctgaactagatcgttgtgatatttctgcaacttttaaaagaactgcacccg
gagaccactgtcgtttggctaccgtatctcgtgaacgtgtcccagatatggaggatgttg
ttaaatgggcagttgagaacaatactcgaatgctttttgatgttaaggattccgataatg
agctcgttgatcaaattgccaatctttttcaaaaatacaatctctatgacaaggcaatcg
tatgcagtttcttcccttgggttgtatatcgtatcaagaaaggagatcaaaagattttga
cgggtttgacgtggcgtctcaagttctggtcttaccacgacattgagaatatccgtccaa
gatactcgggaccaaaacaaatgctttttgaaatgattgatgttgctcatgtttggcttc
taaaaaaagttactccttggtatcttggagctgatcttttgcttacgaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCCGTGCTGAACTAGATCGTTG 560 125 392 Antisense
TAAAAGAACTGCACCCGGAGACCAC 59 639 435 Antisense
GTTTGGCTACCGTATCTCGTGAACG 196 449 464 Antisense
TCTCGTGAACGTGTCCCAGATATGG 514 609 478 Antisense
GGCAATCGTATGCAGTTTCTTCCCT 263 535 624 Antisense
CTTCCCTTGGGTTGTATATCGTATC 482 219 642 Antisense
TGACGTGGCGTCTCAAGTTCTGGTC 583 563 698 Antisense
AGTTCTGGTCTTACCACGACATTGA 293 63 713 Antisense
GAATATCCGTCCAAGATACTCGGGA 151 323 738 Antisense
ATGTTGCTCATGTTTGGCTTCTAAA 466 47 791 Antisense
GGAGCTGATCTTTTGCTTACGAATA 513 521 838 Antisense
Sequence Source Affymetrix Proprietary Database