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[185875_at]

Description C09H10.10 /REP_DB=WormBase Gene ID /WP=CE23538 /TR=Q9U3Q2 /GB=CAB54192.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 90      6grp_total > 69      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 174.5
(2.4)
P 		128.2
(-3)
P 		169.6
(1.9)
P 		179.3
(3)
P 		51
B 256.7
(3)
P 		98.1
(-3)
P 		109.1
(-2.6)
P 		145.3
(-1.2)
P 		159
C 237.7
(3)
P 		122.9
(-2)
P 		100.9
(-3)
P 		191.8
(1)
P 		137
avr 223
(3) 		116.4
(-3) 		126.5
(-2.4) 		172.1
(0.1) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 157.7
(-0.9)
P 		181.2
(0.2)
P 		114
(-3)
P 		192.2
(0.7)
P 		150.5
(-1.3)
P 		241
(3)
P 		127
B 155.4
(-1)
P 		172.8
(-0.1)
P 		149.2
(-1.3)
P 		114.4
(-3)
P 		192.7
(0.9)
P 		235.8
(3)
P 		121
C 227.6
(1.1)
P 		156.9
(-2.4)
P 		145.1
(-3)
P 		154.5
(-2.5)
P 		152.3
(-2.6)
P 		264.7
(3)
P 		120
avr 180.2
(-0.6) 		170.3
(-1.2) 		136.1
(-3) 		153.7
(-2) 		165.2
(-1.4) 		247.2
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 63.5
(3)
P 		27.8
(-2.7)
P 		44.3
(-0.1)
P 		26.2
(-3)
P 		37
B 81.9
(3)
P 		24.2
(-3)
P 		25.3
(-2.9)
P 		31
(-2.3)
P 		58
C 78.7
(3)
P 		35.3
(-2.6)
P 		35.2
(-2.6)
P 		32.3
(-3)
P 		46
avr 74.7
(3) 		29.1
(-3) 		34.9
(-2.2) 		29.8
(-2.9) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 29.1
(-2.3)
P 		64.4
(3)
P 		24.8
(-3)
P 		48.7
(0.6)
P 		45.4
(0.1)
P 		58.7
(2.1)
P 		40
B 54.1
(-0.5)
P 		57.5
(-0.2)
P 		36.2
(-2.4)
P 		30.3
(-3)
P 		78.3
(2)
P 		87.9
(3)
P 		58
C 84.4
(2.6)
P 		47.9
(-1.2)
P 		36.9
(-2.4)
P 		31.1
(-3)
P 		49.3
(-1.1)
P 		88.6
(3)
P 		58
avr 55.9
(0.1) 		56.6
(0.1) 		32.6
(-3) 		36.7
(-2.5) 		57.7
(0.3) 		78.4
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3207
Sequence Type Exemplar sequence
Representative Public ID C09H10.10 NCBI
Target Description C09H10.10 /REP_DB=WormBase Gene ID /WP=CE23538 /TR=Q9U3Q2 /GB=CAB54192.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063973 NCBI Caenorhabditis elegans C09H10.10 (C09H10.10) mRNA, complete cds. 11/11 None
SNAP00000010328 ENSEMBL cdna:SNAP chromosome:CEL140:II:11095065:11096388:-1 11/11 None
GENEFINDER00000010338 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11095065:11096388:-1 11/11 None
C09H10.10 ENSEMBL cdna:known chromosome:CEL140:II:11095845:11096388:-1 gene:C09H10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C09H10.2.3 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11095841-11096385(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09H10.10
Entrez Gene 174694 Entrez gene
SwissProt Q9U3Q2 EMBL-EBI
WormBase CE23538 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54192 Hypothetical protein C09H10.10 [Caenorhabditis elegans] ref|NP_496374.1| C09H10.10 [Caenorhabditis elegans] 3.0E-81
blast CAB54192 Hypothetical protein C09H10.10 [Caenorhabditis elegans] ref|NP_496374.1| C09H10.10 [Caenorhabditis elegans] 7.0E-80
blast CAB54192 Hypothetical protein C09H10.10 [Caenorhabditis elegans] ref|NP_496374.1| C09H10.10 [Caenorhabditis elegans] 4.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 1.3E-12
Sequence
Target Sequence 
>C. ELEGANS:185875_AT
agaaaggctccgtggtcaacttcggtcgggaaaagaaagtctgtcacatcacatttgatc
ctcatgccgctcgagtttcaagaattcatgcgagcatagaatggggcgatgagggtctat
ttttcaccgataaaagtaaagaaggaaccgaaatcaacggaacacgattgaaacaatcta
gtcaggagcttcacgaaggagtgtatcagcttgcgattggtggaatctctatgactctgg
aagttgacggcgatgagctagaagagacggtcatagattctccacaacccgatgaatcca
gtactgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAAGGCTCCGTGGTCAACTTCGG 319 73 74 Antisense
GAAAGTCTGTCACATCACATTTGAT 296 361 108 Antisense
CACATCACATTTGATCCTCATGCCG 14 197 118 Antisense
CCTCATGCCGCTCGAGTTTCAAGAA 40 269 133 Antisense
ATGGGGCGATGAGGGTCTATTTTTC 540 49 174 Antisense
AACAATCTAGTCAGGAGCTTCACGA 159 135 245 Antisense
GGAGTGTATCAGCTTGCGATTGGTG 125 517 271 Antisense
ATTGGTGGAATCTCTATGACTCTGG 660 3 289 Antisense
ATGACTCTGGAAGTTGACGGCGATG 144 45 304 Antisense
GACGGTCATAGATTCTCCACAACCC 181 377 339 Antisense
AACCCGATGAATCCAGTACTGTTCC 375 145 359 Antisense
Sequence Source Affymetrix Proprietary Database