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[185872_at]

Description C49D10.5 /REP_DB=WormBase Gene ID /WP=CE08846 /TR=O16605 /GB=AAC71184.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 21.6
(2.6)
A 		17
(1.1)
A 		22.8
(3)
A 		4.8
(-3)
A 		18
B 23.6
(-3)
A 		57.6
(3)
A 		24.7
(-2.8)
A 		44.8
(0.7)
A 		34
C 36.2
(-1.3)
A 		15.4
(-3)
A 		15.8
(-3)
A 		87
(3)
P 		72
avr 27.1
(-1.5) 		30
(-0.8) 		21.1
(-3) 		45.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 8.9
(-1.9)
A 		3.9
(-3)
A 		6.5
(-2.4)
A 		14.9
(-0.6)
A 		30.2
(2.8)
A 		31.2
(3)
A 		27
B 29.2
(0.6)
A 		17.6
(-2.4)
A 		28.6
(0.5)
A 		38.3
(3)
A 		15.2
(-3)
A 		26.2
(-0.1)
A 		23
C 13
(-1.3)
A 		38.9
(3)
A 		3.1
(-3)
A 		32
(1.8)
A 		12.4
(-1.4)
A 		12.6
(-1.4)
A 		36
avr 17
(-1.4) 		20.1
(-0.2) 		12.7
(-3) 		28.4
(3) 		19.3
(-0.5) 		23.3
(1.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.9
(3)
A 		3.7
(-0.5)
A 		6
(1.4)
A 		0.7
(-3)
A 		7
B 7.5
(-1.7)
A 		14.2
(3)
A 		5.7
(-3)
A 		9.5
(-0.3)
A 		9
C 12
(1.4)
A 		4.4
(-3)
A 		5.5
(-2.4)
A 		14.7
(3)
P 		10
avr 9.1
(3) 		7.4
(0) 		5.7
(-3) 		8.3
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-2.8)
A 		1.4
(-3)
A 		1.4
(-3)
A 		3.8
(-1.1)
A 		9.1
(3)
A 		7.6
(1.8)
A 		8
B 10.2
(3)
A 		5.9
(-3)
A 		7
(-1.5)
A 		10.2
(3)
A 		6.2
(-2.6)
A 		9.8
(2.4)
A 		4
C 4.8
(-0.8)
A 		11.9
(3)
A 		0.8
(-3)
A 		6.4
(0)
A 		4
(-1.3)
A 		4.2
(-1.2)
A 		11
avr 5.5
(0.5) 		6.4
(1.8) 		3.1
(-3) 		6.8
(2.4) 		6.4
(1.8) 		7.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4863
Sequence Type Exemplar sequence
Representative Public ID C49D10.5 NCBI
Target Description C49D10.5 /REP_DB=WormBase Gene ID /WP=CE08846 /TR=O16605 /GB=AAC71184.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062276
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008453 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3869894:3873003:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062276 6/11 Cross Hyb Matching Probes None
C49D10.5 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3869892-3871947(+) 98.98 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17771 Hypothetical protein C43F9.10 [Caenorhabditis elegans] ref|NP_001023061.1| C43F9.10 [Caenorhabditis elegans] 0.0
blast CAE60736 Hypothetical protein CBG04420 [Caenorhabditis briggsae] 0.0
blast AAC71179 Hypothetical protein C49D10.4 [Caenorhabditis elegans] ref|NP_494678.1| C49D10.4 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 9.2E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008453 10 31-50,70-89,133-155,162-181,185-207,245-267,298-320,327-346,361-383,456-475
Sequence
Target Sequence 
>C. ELEGANS:185872_AT
gatgcagttttacattcttgcgcctgcaatattttttgtattttcacaatgcacaactgg
aacatcccttgctttgtatcacataatattcattttcacatccctcggaacctatttatt
ttcctccgatcaaattgcgtttaacagtgcattagtgtaccttggagacgtttcgtatag
tttatatctcattcattggccagttttcgtgtatgtgaagcattactacggagaacaatt
tttaggtaagcaatgtctgaacaatcacctcgagttttttttaaacttcagtatattttc
tggcgattattttctctactctccttgcaatcataatgtcggaaacctacgagaaatggt
acctaagcataggaaagttcgaaattctgtctcttattggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAGTTTTACATTCTTGCGCCT 110 413 432 Antisense
ATGCACAACTGGAACATCCCTTGCT 682 43 480 Antisense
ACATCCCTTGCTTTGTATCACATAA 29 107 493 Antisense
ATAATATTCATTTTCACATCCCTCG 452 25 514 Antisense
CACATCCCTCGGAACCTATTTATTT 176 197 528 Antisense
ATTTTCCTCCGATCAAATTGCGTTT 320 13 549 Antisense
GTGTACCTTGGAGACGTTTCGTATA 554 443 586 Antisense
TCATTCATTGGCCAGTTTTCGTGTA 545 619 620 Antisense
GTCTGAACAATCACCTCGAGTTTTT 677 469 686 Antisense
TCTCTACTCTCCTTGCAATCATAAT 223 613 744 Antisense
GTTCGAAATTCTGTCTCTTATTGGT 245 443 808 Antisense
Sequence Source Affymetrix Proprietary Database