[Home] | [Total List]

[185869_at]

Description F35H10.3 /REP_DB=WormBase Gene ID /WP=CE04503 /TR=Q20074 /GB=AAA81684.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 20      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 71      6grp_total > 41      4grp_total > 12      6grp_highest_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 447
1 2 3 4 range
A 320.4
(-1)
P 		245.1
(-2)
P 		178
(-3)
P 		594.8
(3)
P 		417
B 272.4
(-1.4)
P 		220.6
(-2.1)
P 		157.3
(-3)
P 		578.4
(3)
P 		421
C 262
(-1)
P 		213.6
(-1.9)
P 		147.6
(-3)
P 		492.4
(3)
P 		345
avr 284.9
(-1.1) 		226.4
(-2) 		161
(-3) 		555.2
(3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 333.3
(0.5)
P 		257.8
(-1.2)
P 		451.9
(3)
P 		375.9
(1.4)
P 		266.8
(-1)
P 		171.7
(-3)
P 		280
B 443.7
(1.1)
P 		412.5
(0.4)
P 		532.5
(3)
P 		389.6
(-0)
P 		260.3
(-2.8)
P 		251.2
(-3)
P 		281
C 304
(-0.3)
P 		393.7
(3)
P 		281.2
(-1.1)
P 		338.2
(1)
P 		228.5
(-3)
P 		260.5
(-1.8)
P 		165
avr 360.3
(1.1) 		354.7
(0.9) 		421.9
(3) 		367.9
(1.3) 		251.9
(-2.3) 		227.8
(-3) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 116.6
(3)
P 		53.2
(-2.4)
P 		46.5
(-3)
P 		87.1
(0.5)
P 		70
B 86.9
(0.5)
P 		54.5
(-1.8)
P 		36.5
(-3)
P 		123.3
(3)
P 		87
C 86.7
(3)
P 		61.4
(-1.3)
P 		51.5
(-3)
P 		83
(2.4)
P 		35
avr 96.7
(2.9) 		56.4
(-1.7) 		44.8
(-3) 		97.8
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 61.4
(-0.9)
P 		91.7
(2.3)
P 		98.4
(3)
P 		95.3
(2.7)
P 		80.5
(1.1)
P 		41.8
(-3)
P 		57
B 154.4
(3)
P 		137.3
(1.3)
P 		129.3
(0.5)
P 		103.2
(-2.1)
P 		105.8
(-1.8)
P 		93.7
(-3)
P 		61
C 112.7
(2.1)
P 		120.1
(3)
P 		71.6
(-2.6)
P 		68
(-3)
P 		73.9
(-2.3)
P 		87.2
(-0.8)
P 		52
avr 109.5
(2) 		116.4
(3) 		99.8
(0.6) 		88.8
(-0.9) 		86.7
(-1.2) 		74.2
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10033
Sequence Type Exemplar sequence
Representative Public ID F35H10.3 NCBI
Target Description F35H10.3 /REP_DB=WormBase Gene ID /WP=CE04503 /TR=Q20074 /GB=AAA81684.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069000
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039437 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8326083:8326952:1 None
SNAP00000039428 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8326083:8326883:1 None
NM_069000 NCBI Caenorhabditis elegans F35H10.3 (F35H10.3) mRNA, complete cds. None
F35H10.3 ENSEMBL cdna:known chromosome:CEL140:IV:8325949:8326952:1 gene:F35H10.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8324840-8326958(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35H10.3
Entrez Gene 185329 Entrez gene
SwissProt Q20074 EMBL-EBI
WormBase CE36592 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE58457 Hypothetical protein CBG01597 [Caenorhabditis briggsae] 1.0E-47
blast CAE58457 Hypothetical protein CBG01597 [Caenorhabditis briggsae] 6.0E-34
blast AAA81684 Hypothetical protein F35H10.3 [Caenorhabditis elegans] ref|NP_501401.2| F35H10.3 [Caenorhabditis elegans] 1.0E-16
blast CAE58457 Hypothetical protein CBG01597 [Caenorhabditis briggsae] 5.0E-14
blast AAA81684 Hypothetical protein F35H10.3 [Caenorhabditis elegans] ref|NP_501401.2| F35H10.3 [Caenorhabditis elegans] 3.0E-13
blast AAA81684 Hypothetical protein F35H10.3 [Caenorhabditis elegans] ref|NP_501401.2| F35H10.3 [Caenorhabditis elegans] 1.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039437 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:185869_AT
aatagtcggtatcgaacacgtctccgataccgctctctctctccccatacaaatgcgtaa
tctatttttgttattggtgttatgtacaattgcttcaagttgggtgatatatagaaaaag
tcacaagaaacgattaatttgtcgtgaagaaaccgaatggactaactcaacagcaagtta
cattaataattcagcaattcgttcaaattctgatgaagatgatgatagttctgcgtcttc
tgaaacaagagctcgcaagagaagtaaaagggatatcgaagtggatcctgtgcacaaaga
gccaatcatttatcttgggatggcaagtaactcaacggtatttatcgatgatggagattt
tgatatagtgtctgaccaacttaccaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAGTCGGTATCGAACACGTCTCC 303 173 18 Antisense
GTATCGAACACGTCTCCGATACCGC 389 455 26 Antisense
CTCTCTCCCCATACAAATGCGTAAT 526 231 54 Antisense
AACCGAATGGACTAACTCAACAGCA 188 147 168 Antisense
GATGATGATAGTTCTGCGTCTTCTG 245 411 235 Antisense
GCGTCTTCTGAAACAAGAGCTCGCA 8 291 250 Antisense
GATATCGAAGTGGATCCTGTGCACA 53 425 289 Antisense
GGATCCTGTGCACAAAGAGCCAATC 277 513 300 Antisense
GAGCCAATCATTTATCTTGGGATGG 332 385 316 Antisense
GGGATGGCAAGTAACTCAACGGTAT 653 493 334 Antisense
ATAGTGTCTGACCAACTTACCAAAG 679 1 382 Antisense
Sequence Source Affymetrix Proprietary Database