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[185868_at]

Description Y46B2A.3 /REP_DB=WormBase Gene ID /WP=CE21949 /TR=Q9N4X3 /GB=AAF60593.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.1
(-3)
A 		2.9
(-0.5)
A 		3.4
(1.1)
A 		4
(3)
A 		2
B 15.3
(3)
A 		2.3
(-3)
A 		11.5
(1.2)
A 		2.5
(-2.9)
A 		13
C 3.1
(-2.6)
A 		3.6
(-2.5)
A 		1.6
(-3)
A 		27
(3)
A 		25
avr 6.8
(-0.2) 		2.9
(-3) 		5.5
(-1.1) 		11.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.9
(-0.8)
A 		4.3
(-2.4)
A 		4.9
(-2.2)
A 		2.2
(-3)
A 		23.2
(3)
A 		2.1
(-3)
A 		21
B 2.3
(-2.1)
A 		1.9
(-2.4)
A 		1.1
(-3)
A 		2.5
(-1.9)
A 		2.7
(-1.8)
A 		8.9
(3)
A 		8
C 14.5
(3)
A 		2
(-2.7)
A 		1.3
(-3)
A 		12.7
(2.2)
A 		1.9
(-2.7)
A 		3.3
(-2.1)
A 		13
avr 8.9
(2.7) 		2.7
(-2.7) 		2.4
(-3) 		5.8
(-0) 		9.3
(3) 		4.8
(-0.9) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.8
(1)
A 		0.6
(-3)
A 		0.9
(3)
A 		0.6
(-3)
A 		0
B 4.9
(3)
A 		0.6
(-2.9)
A 		2.7
(0)
A 		0.5
(-3)
A 		4
C 1
(-2.3)
A 		1
(-2.3)
A 		0.5
(-3)
A 		4.6
(3)
A 		4
avr 2.2
(3) 		0.7
(-3) 		1.4
(-0.2) 		1.9
(1.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.8
(-1.8)
A 		1.5
(-2.1)
A 		1.1
(-2.4)
A 		0.6
(-2.9)
A 		7
(3)
A 		0.5
(-3)
A 		7
B 0.8
(-2)
A 		0.6
(-2.4)
A 		0.3
(-3)
A 		0.7
(-2.2)
A 		1.1
(-1.4)
A 		3.3
(3)
A 		3
C 5.4
(3)
A 		0.6
(-2.6)
A 		0.3
(-3)
A 		2.6
(-0.3)
A 		0.6
(-2.6)
A 		1.1
(-2.1)
A 		5
avr 2.7
(2.5) 		0.9
(-2.2) 		0.6
(-3) 		1.3
(-1.2) 		2.9
(3) 		1.6
(-0.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4494
Sequence Type Exemplar sequence
Representative Public ID Y46B2A.3 NCBI
Target Description Y46B2A.3 /REP_DB=WormBase Gene ID /WP=CE21949 /TR=Q9N4X3 /GB=AAF60593.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061434 NCBI Caenorhabditis elegans Y46B2A.3 (Y46B2A.3) mRNA, complete cds. 11/11 None
SNAP00000022587 ENSEMBL cdna:SNAP chromosome:CEL140:II:863011:866907:-1 9/11 None
GENEFINDER00000022592 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:863011:866907:-1 11/11 None
Y46B2A.3 ENSEMBL cdna:known chromosome:CEL140:II:863011:866907:-1 gene:Y46B2A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:863010-866907(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46B2A.3
Entrez Gene 189942 Entrez gene
SwissProt Q9N4X3 EMBL-EBI
WormBase CE21949 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOUSE430_2:1422320_X_AT per-hexamer repeat gene 5 mm
MOE430A:1422320_X_AT per-hexamer repeat gene 5 mm
MOUSE430A_2:1422320_X_AT per-hexamer repeat gene 5 mm
MU11KSUBB:MSA.1883.0_AT per-hexamer repeat gene 5 mm
MG-U74AV2:101732_AT per-hexamer repeat gene 5 mm
Protein Similarities
Method ID Description E-Value
blast AAF60593 Hypothetical protein Y46B2A.3 [Caenorhabditis elegans] ref|NP_493835.1| Y46B2A.3 [Caenorhabditis elegans] 0.0
blast CAA20998 Hypothetical protein Y38H6C.19 [Caenorhabditis elegans] ref|NP_507963.1| Y38H6C.19 [Caenorhabditis elegans] 3.0E-13
blast CAB16498 Hypothetical protein Y57G11A.2 [Caenorhabditis elegans] emb|CAB05294.1| Hypothetical protein Y57G11A.2 [Caenorhabditis elegans] ref|NP_502758.1| Y57G11A.2 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.8E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493835.1 2 7-24,1082-1104
Y46B2A.3 2 7-24,1082-1104
SNAP00000022587 2 7-24,1109-1131
GENEFINDER00000022592 2 7-24,1082-1104
Sequence
Target Sequence 
>C. ELEGANS:185868_AT
cagctggatggacaagtgagcctcaaaaaatacgttgtagttatcattggagttgttctt
ctcatcattctgatggttctcgcctatctgttcatcagtggacataaaggattcgatgag
cagcgtttcttcaacgtccaaagggtccaaaacatccgaagcatccaaaacatccaaagc
atcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTGGATGGACAAGTGAGCCTCA 708 135 3226 Antisense
GTGAGCCTCAAAAAATACGTTGTAG 292 483 3241 Antisense
ATACGTTGTAGTTATCATTGGAGTT 382 23 3255 Antisense
TATCATTGGAGTTGTTCTTCTCATC 195 659 3267 Antisense
TCATCATTCTGATGGTTCTCGCCTA 540 619 3287 Antisense
TTCTCGCCTATCTGTTCATCAGTGG 95 693 3302 Antisense
GCCTATCTGTTCATCAGTGGACATA 87 281 3307 Antisense
AGGATTCGATGAGCAGCGTTTCTTC 154 57 3333 Antisense
GCAGCGTTTCTTCAACGTCCAAAGG 504 313 3345 Antisense
AAAGGGTCCAAAACATCCGAAGCAT 592 71 3365 Antisense
CATCCAAAACATCCAAAGCATCGAA 92 211 3387 Antisense
Sequence Source Affymetrix Proprietary Database