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[185867_s_at]

Description Y75B12A.2 /REP_DB=WormBase Gene ID /WP=CE19269 /TR=Q9XTE8 /GB=CAA21758.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.3
(-2)
A 		1.6
(-3)
A 		11.8
(3)
A 		8
(0.8)
A 		10
B 3.8
(-2.5)
A 		23.4
(3)
A 		22.7
(2.8)
A 		1.9
(-3)
A 		22
C 3.5
(1.9)
A 		3
(0.9)
A 		1.2
(-3)
A 		4
(3)
A 		3
avr 3.5
(-3) 		9.3
(1.1) 		11.9
(3) 		4.6
(-2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.1
(-0.2)
A 		16.6
(0.9)
A 		4
(-2.8)
A 		10.3
(-1)
A 		23.9
(3)
A 		3.4
(-3)
A 		21
B 6.1
(-1.4)
A 		19.3
(3)
A 		1.6
(-2.8)
A 		3.2
(-2.3)
A 		1.6
(-2.8)
A 		1.1
(-3)
A 		18
C 24.4
(2.5)
A 		26.8
(3)
A 		0.6
(-3)
A 		1.4
(-2.8)
A 		2.7
(-2.5)
A 		22.1
(1.9)
A 		26
avr 14.5
(1) 		20.9
(3) 		2.1
(-3) 		5
(-2.1) 		9.4
(-0.7) 		8.9
(-0.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-1.1)
A 		0.3
(-3)
A 		3.1
(3)
A 		1.2
(-1.1)
A 		3
B 1.2
(-2.1)
A 		5.8
(3)
A 		5.2
(2.3)
A 		0.4
(-3)
A 		5
C 1.2
(3)
A 		0.9
(0.8)
A 		0.4
(-3)
A 		0.7
(-0.8)
A 		1
avr 1.2
(-1.9) 		2.3
(1.3) 		2.9
(3) 		0.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.4
(-1.5)
A 		5.9
(1.8)
A 		0.9
(-2.9)
A 		2.6
(-1.3)
A 		7.2
(3)
A 		0.8
(-3)
A 		6
B 2.1
(-1.3)
A 		6.4
(3)
A 		0.4
(-3)
A 		0.8
(-2.6)
A 		0.7
(-2.7)
A 		0.4
(-3)
A 		6
C 9
(3)
A 		8.2
(2.5)
A 		0.2
(-3)
A 		0.3
(-2.9)
A 		0.9
(-2.5)
A 		7.4
(1.9)
A 		9
avr 4.5
(0.8) 		6.8
(3) 		0.5
(-3) 		1.2
(-2.3) 		2.9
(-0.7) 		2.9
(-0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185867_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14221
Sequence Type Exemplar sequence
Representative Public ID Y75B12A.2 NCBI
Target Description Y75B12A.2 /REP_DB=WormBase Gene ID /WP=CE19269 /TR=Q9XTE8 /GB=CAA21758.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074247(11), NM_074324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074247 NCBI Caenorhabditis elegans Y50E8A.11 (Y50E8A.11) mRNA, complete cds. 11/11 A 
NM_074324 NCBI Caenorhabditis elegans Y75B12A.2 (Y75B12A.2) mRNA, complete cds. 11/11 A 
SNAP00000008994 ENSEMBL cdna:SNAP chromosome:CEL140:V:14784082:14784798:1 11/11 None
GENEFINDER00000009977 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14784082:14784798:1 11/11 None
SNAP00000029268 ENSEMBL cdna:SNAP chromosome:CEL140:V:15112339:15112931:1 10/11 None
GENEFINDER00000029279 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15112421:15112931:1 9/11 None
Y50E8A.11 ENSEMBL cdna:known chromosome:CEL140:V:14784082:14784798:1 gene:Y50E8A.11 11/11 A 
Y75B12A.2 ENSEMBL cdna:known chromosome:CEL140:V:15112163:15112931:1 gene:Y75B12A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15112162-15112931(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y50E8A.11
Y75B12A.2
Entrez Gene 190111 Entrez gene
190715 Entrez gene
SwissProt Q9NAE7 EMBL-EBI
Q9XTE8 EMBL-EBI
WormBase CE22318 Wormbase
CE19269 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21758 Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] emb|CAB03271.1| Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] ref|NP_506725.1| Y75B12A.2 [Caenorhabditis elegans] 1.0E-106
blast CAB55059 Hypothetical protein Y50E8A.11 [Caenorhabditis elegans] ref|NP_506648.1| Y50E8A.11 [Caenorhabditis elegans] 3.0E-94
blast CAA21758 Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] emb|CAB03271.1| Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] ref|NP_506725.1| Y75B12A.2 [Caenorhabditis elegans] 3.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506648.1 1 155-177
NP_506725.1 2 5-27,172-194
Y50E8A.11 1 155-177
Y75B12A.2 2 5-27,172-194
SNAP00000008994 1 155-177
GENEFINDER00000009977 1 155-177
SNAP00000029268 1 114-136
GENEFINDER00000029279 1 86-108
Sequence
Target Sequence 
>C. ELEGANS:185867_S_AT
gtcatttttcattgcatctttcaacaaattcaagtcttcaaattgtcgaattggcaatgg
gatctacaagaactctcagttttcatccaaaagatcatcaagagactcttgaaattgtat
tttcgaaggaattcaacttcccattgaagtatgcttataaaatggaaactgatgatagta
gctatcaaacatttgcattcactgatattgttcttcttgttaaatcgacttttaaatgtg
atgctggttttaatggaaaatcatgtcaagagaagactacaagtacaactactactactt
ccactaaaactgaaatccaaactacaaccactacagttttgatttcggaagttccatcaa
ctactccaattatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATTTTTCATTGCATCTTTCAAC 42 469 110 Antisense
TTCAACTTCCCATTGAAGTATGCTT 188 685 241 Antisense
ATGGAAACTGATGATAGTAGCTATC 211 53 271 Antisense
GTAGCTATCAAACATTTGCATTCAC 211 457 287 Antisense
ACATTTGCATTCACTGATATTGTTC 525 105 298 Antisense
CATTCACTGATATTGTTCTTCTTGT 182 217 305 Antisense
TCACTGATATTGTTCTTCTTGTTAA 281 625 308 Antisense
TGTTCTTCTTGTTAAATCGACTTTT 567 561 318 Antisense
ACCACTACAGTTTTGATTTCGGAAG 602 83 436 Antisense
TGATTTCGGAAGTTCCATCAACTAC 12 563 449 Antisense
GTTCCATCAACTACTCCAATTATTA 13 441 460 Antisense
Sequence Source Affymetrix Proprietary Database