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[185866_at]

Description Y75B12A.2 /REP_DB=WormBase Gene ID /WP=CE19269 /TR=Q9XTE8 /GB=CAA21758.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.6
(-3)
A 		4.6
(2.2)
A 		4.1
(0.9)
A 		4.9
(3)
A 		2
B 3.2
(-3)
A 		3.7
(-1.1)
A 		4
(0)
A 		4.8
(3)
A 		2
C 3.4
(-2.3)
A 		20.6
(3)
A 		1.3
(-3)
A 		9.6
(-0.4)
A 		19
avr 3.1
(-3) 		9.6
(3) 		3.1
(-3) 		6.4
(0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.7
(3)
A 		10.5
(-2)
A 		3.4
(-2.8)
A 		33.3
(0.7)
A 		22.5
(-0.6)
A 		2.1
(-3)
A 		51
B 21.5
(0.4)
A 		9.4
(-2.1)
A 		34.2
(3)
A 		5.8
(-2.8)
A 		4.8
(-3)
A 		14.7
(-1)
A 		29
C 5.6
(0.7)
A 		7.4
(3)
A 		4.4
(-0.9)
A 		3.6
(-2)
A 		2.8
(-3)
A 		6.3
(1.6)
A 		5
avr 26.6
(3) 		9.1
(-2.6) 		14
(-1) 		14.2
(-0.9) 		10
(-2.3) 		7.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1
(1.5)
A 		1
(1.5)
A 		1.1
(3)
A 		0.7
(-3)
A 		0
B 1
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
(3)
A 		0
C 1.1
(-2.3)
A 		5.9
(3)
A 		0.5
(-3)
A 		1.6
(-1.8)
A 		5
avr 1
(-2.3) 		2.6
(3) 		0.8
(-3) 		1.1
(-2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.7
(3)
A 		3.7
(-0.9)
A 		0.7
(-2.9)
A 		8.4
(2.2)
A 		6.8
(1.1)
A 		0.5
(-3)
A 		9
B 7.5
(2.3)
A 		3.1
(-1.6)
A 		8.3
(3)
A 		1.5
(-3)
A 		2
(-2.6)
A 		5.5
(0.5)
A 		7
C 2.1
(2.3)
A 		2.3
(3)
A 		1.1
(-1.5)
A 		0.7
(-3)
A 		0.9
(-2.3)
A 		2.1
(2.3)
A 		2
avr 6.4
(3) 		3
(-2.5) 		3.4
(-1.9) 		3.5
(-1.7) 		3.2
(-2.2) 		2.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14221
Sequence Type Exemplar sequence
Representative Public ID Y75B12A.2 NCBI
Target Description Y75B12A.2 /REP_DB=WormBase Gene ID /WP=CE19269 /TR=Q9XTE8 /GB=CAA21758.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074324 NCBI Caenorhabditis elegans Y75B12A.2 (Y75B12A.2) mRNA, complete cds. 11/11 A 
SNAP00000029268 ENSEMBL cdna:SNAP chromosome:CEL140:V:15112339:15112931:1 10/11 None
GENEFINDER00000029279 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15112421:15112931:1 10/11 None
Y75B12A.2 ENSEMBL cdna:known chromosome:CEL140:V:15112163:15112931:1 gene:Y75B12A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15112162-15112931(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B12A.2
Entrez Gene 190715 Entrez gene
SwissProt Q9XTE8 EMBL-EBI
WormBase CE19269 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21758 Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] emb|CAB03271.1| Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] ref|NP_506725.1| Y75B12A.2 [Caenorhabditis elegans] 1.0E-106
blast CAB55059 Hypothetical protein Y50E8A.11 [Caenorhabditis elegans] ref|NP_506648.1| Y50E8A.11 [Caenorhabditis elegans] 4.0E-81
blast CAA21758 Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] emb|CAB03271.1| Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] ref|NP_506725.1| Y75B12A.2 [Caenorhabditis elegans] 8.0E-73
blast CAB55059 Hypothetical protein Y50E8A.11 [Caenorhabditis elegans] ref|NP_506648.1| Y50E8A.11 [Caenorhabditis elegans] 1.0E-59
blast CAA21758 Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] emb|CAB03271.1| Hypothetical protein Y75B12A.2 [Caenorhabditis elegans] ref|NP_506725.1| Y75B12A.2 [Caenorhabditis elegans] 6.0E-56
blast CAB55059 Hypothetical protein Y50E8A.11 [Caenorhabditis elegans] ref|NP_506648.1| Y50E8A.11 [Caenorhabditis elegans] 3.0E-43
blast CAB03276 Hypothetical protein AH10.2 [Caenorhabditis elegans] emb|CAB02689.1| Hypothetical protein AH10.2 [Caenorhabditis elegans] ref|NP_506503.1| AH10.2 [Caenorhabditis elegans] 4.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506725.1 2 5-27,172-194
Y75B12A.2 2 5-27,172-194
SNAP00000029268 1 114-136
GENEFINDER00000029279 1 86-108
Sequence
Target Sequence 
>C. ELEGANS:185866_AT
atgggatctacaagaactctcagttttcatccaaaagatcatcaagagactcttgaaatt
gtattttcgaaggaattcaacttcccattgaagtatgcttataaaatggaaactgatgat
agtagctatcaaacatttgcattcactgatattgttcttcttgttaaatcgacttttaaa
tgtgatgctggttttaatggaaaatcatgtcaagagaagactacaagtacaactactact
acttccactaaaactgaaatccaaactacaaccactacagttttgatttcggaagttcca
tcaactactccaattattaatgctgcagcattccaacaattcgacaactctaatactatt
atgtgctcagttcttatcatcgtcacagccactctcctggttttggttctgatcgctttc
ttcttactcaaatttcaaaagaaaaatgtctacattcgaccgggaactccgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGATCTACAAGAACTCTCAGTT 199 51 166 Antisense
TACTACTACTTCCACTAAAACTGAA 310 637 399 Antisense
CACTAAAACTGAAATCCAAACTACA 366 195 411 Antisense
TTATTAATGCTGCAGCATTCCAACA 2 679 479 Antisense
AACAATTCGACAACTCTAATACTAT 401 133 500 Antisense
TACTATTATGTGCTCAGTTCTTATC 292 645 519 Antisense
CCACTCTCCTGGTTTTGGTTCTGAT 436 275 554 Antisense
TGATCGCTTTCTTCTTACTCAAATT 96 567 575 Antisense
CGCTTTCTTCTTACTCAAATTTCAA 393 255 579 Antisense
ATGTCTACATTCGACCGGGAACTCC 162 49 611 Antisense
TACATTCGACCGGGAACTCCGAATT 312 629 616 Antisense
Sequence Source Affymetrix Proprietary Database