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[185865_at]

Description C46E10.5 /REP_DB=WormBase Gene ID /WP=CE08763 /TR=O44714 /GB=AAB96690.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 88.9
(0.8)
A 		38.2
(-1.8)
A 		14.8
(-3)
A 		130.6
(3)
P 		116
B 141.8
(3)
A 		98.2
(0.9)
A 		14.8
(-3)
A 		75.1
(-0.2)
P 		127
C 87.5
(3)
A 		17.3
(-3)
A 		71
(1.6)
A 		39.5
(-1.1)
A 		70
avr 106.1
(3) 		51.2
(-1.5) 		33.5
(-3) 		81.7
(1) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 63.7
(0.5)
A 		102.5
(3)
A 		70.8
(1)
A 		15.6
(-2.6)
A 		8.7
(-3)
A 		73.1
(1.1)
A 		94
B 85
(3)
A 		84
(2.9)
A 		14.5
(-3)
A 		17
(-2.8)
A 		46.9
(-0.2)
A 		49.5
(-0)
A 		71
C 14
(-2.6)
A 		101.7
(3)
A 		8.1
(-3)
A 		83.4
(1.8)
A 		13.7
(-2.6)
A 		40.2
(-0.9)
A 		94
avr 54.2
(-0.4) 		96.1
(3) 		31.1
(-2.3) 		38.7
(-1.7) 		23.1
(-3) 		54.3
(-0.4) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 32.4
(3)
A 		8.3
(-2.1)
A 		3.9
(-3)
A 		19.1
(0.2)
P 		29
B 45.2
(3)
A 		24.3
(-0)
A 		3.4
(-3)
A 		16
(-1.2)
P 		42
C 29
(3)
A 		5
(-3)
A 		24.7
(1.9)
A 		6.7
(-2.6)
A 		24
avr 35.5
(3) 		12.5
(-2.6) 		10.7
(-3) 		13.9
(-2.2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 11.7
(-1.4)
A 		36.5
(3)
A 		15.4
(-0.7)
A 		3.9
(-2.8)
A 		2.6
(-3)
A 		17.8
(-0.3)
A 		34
B 29.6
(3)
A 		28
(2.6)
A 		3.5
(-3)
A 		4.5
(-2.8)
A 		19
(0.6)
A 		18.5
(0.4)
A 		26
C 5.2
(-2.4)
A 		31
(3)
A 		2.1
(-3)
A 		16.8
(0.1)
A 		4.4
(-2.5)
A 		13.4
(-0.7)
A 		29
avr 15.5
(-0.9) 		31.8
(3) 		7
(-3) 		8.4
(-2.7) 		8.7
(-2.6) 		16.6
(-0.7) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4314
Sequence Type Exemplar sequence
Representative Public ID C46E10.5 NCBI
Target Description C46E10.5 /REP_DB=WormBase Gene ID /WP=CE08763 /TR=O44714 /GB=AAB96690.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062224 NCBI Caenorhabditis elegans C46E10.5 (C46E10.5) mRNA, complete cds. 11/11 None
SNAP00000007033 ENSEMBL cdna:SNAP chromosome:CEL140:II:3711300:3712947:1 11/11 None
GENEFINDER00000007040 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3711300:3712947:1 11/11 None
C46E10.5 ENSEMBL cdna:known chromosome:CEL140:II:3711296:3712973:1 gene:C46E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3711298-3712946(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46E10.5
Entrez Gene 173714 Entrez gene
SwissProt O44714 EMBL-EBI
WormBase CE08763 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96690 Hypothetical protein C46E10.5 [Caenorhabditis elegans] ref|NP_494625.1| C46E10.5 [Caenorhabditis elegans] 0.0
blast AAB96689 Hypothetical protein C46E10.4 [Caenorhabditis elegans] ref|NP_494628.2| C46E10.4 [Caenorhabditis elegans] 3.0E-33
blast CAE62831 Hypothetical protein CBG07010 [Caenorhabditis briggsae] 1.0E-20
Sequence
Target Sequence 
>C. ELEGANS:185865_AT
tttggaacttgctccgttcttggatcacagctcgcttaagaagctaaccttgaacgtcac
taatacgaatgttgatctattgatgttgcctctggtgcagaattgtccagtacttcggat
tgtggaggcaggcaccttcctgagccgtatgctgaaaactactctgctctcagctctaca
aaatcagaaattggaaatctttcctgatattgtgataattgaaagctttccccagctggt
tcagagctgggccacatcttcccgccctatagggtccttagtccaagtaggcattcgaga
agactacaaagaggttttggacattttagactttttgaaggaaagccacggagctcatcc
agcaataattaagaagcttgaaaatacagatttttccaacggattgagcatgctaattga
tggggatttggagctggcaatctatggcggagggaaaattagtgaagaaggactcacccg
tcctcagccctgcaaatggagtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGAACTTGCTCCGTTCTTGGAT 400 655 726 Antisense
GAAGCTAACCTTGAACGTCACTAAT 35 337 765 Antisense
GATCTATTGATGTTGCCTCTGGTGC 53 421 799 Antisense
GGTGCAGAATTGTCCAGTACTTCGG 358 501 819 Antisense
ACCTTCCTGAGCCGTATGCTGAAAA 145 87 859 Antisense
TACTCTGCTCTCAGCTCTACAAAAT 612 645 885 Antisense
AATTGAAAGCTTTCCCCAGCTGGTT 519 177 942 Antisense
CGCCCTATAGGGTCCTTAGTCCAAG 548 253 988 Antisense
GAAGGAAAGCCACGGAGCTCATCCA 636 333 1062 Antisense
GAGCTGGCAATCTATGGCGGAGGGA 143 387 1156 Antisense
GTCCTCAGCCCTGCAAATGGAGTCT 43 477 1205 Antisense
Sequence Source Affymetrix Proprietary Database