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[185864_at]

Description K11D12.3 /REP_DB=WormBase Gene ID /WP=CE12130 /TR=O44618 /GB=AAB94224.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 11      6grp_total > 16      4grp_total > 12      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3135
1 2 3 4 range
A 1994.5
(-1.3)
P 		1439.9
(-2.8)
P 		1361.6
(-3)
P 		3659.9
(3)
P 		2298
B 2007
(-1)
P 		1294.8
(-2.3)
P 		938.5
(-3)
P 		4073.5
(3)
P 		3135
C 1984.2
(-0.8)
P 		1392.7
(-2.3)
P 		1111.8
(-3)
P 		3471.5
(3)
P 		2360
avr 1995.2
(-1) 		1375.8
(-2.4) 		1137.3
(-3) 		3735
(3) 		2598

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3094
1 2 3 4 5 6 range
A 3789.2
(3)
P 		2194.2
(-0.2)
P 		870.8
(-2.9)
P 		1042.5
(-2.5)
P 		852.4
(-2.9)
P 		809.9
(-3)
P 		2979
B 2521.4
(3)
P 		2198.9
(1.9)
P 		1042.5
(-1.9)
P 		897
(-2.3)
P 		879.5
(-2.4)
P 		695.2
(-3)
P 		1826
C 2864.1
(3)
P 		2166
(1)
P 		1196.7
(-1.7)
P 		1263.2
(-1.5)
P 		721.5
(-3)
P 		811.2
(-2.7)
P 		2143
avr 3058.2
(3) 		2186.4
(0.7) 		1036.7
(-2.3) 		1067.6
(-2.2) 		817.8
(-2.9) 		772.1
(-3) 		2286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 651
1 2 3 4 range
A 726.2
(3)
P 		312.6
(-3)
P 		356
(-2.4)
P 		535.7
(0.2)
P 		414
B 640
(0.9)
P 		319.8
(-2.1)
P 		217.5
(-3)
P 		868.1
(3)
P 		651
C 656.8
(3)
P 		400.4
(-2.7)
P 		387.5
(-3)
P 		585.4
(1.4)
P 		269
avr 674.3
(3) 		344.3
(-2.6) 		320.3
(-3) 		663.1
(2.8) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 872
1 2 3 4 5 6 range
A 698.5
(2.2)
P 		780.4
(3)
P 		189.6
(-3)
P 		264.4
(-2.2)
P 		257.2
(-2.3)
P 		197.2
(-2.9)
P 		591
B 877.3
(3)
P 		731.9
(1.6)
P 		253.1
(-2.9)
P 		237.6
(-3)
P 		357.3
(-1.9)
P 		259.2
(-2.8)
P 		640
C 1061.6
(3)
P 		660.9
(0.1)
P 		304.6
(-2.5)
P 		254
(-2.9)
P 		233.5
(-3)
P 		271.6
(-2.7)
P 		828
avr 879.1
(3) 		724.4
(1.5) 		249.1
(-2.9) 		252
(-2.9) 		282.7
(-2.6) 		242.7
(-3) 		636
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14942
Sequence Type Exemplar sequence
Representative Public ID K11D12.3 NCBI
Target Description K11D12.3 /REP_DB=WormBase Gene ID /WP=CE12130 /TR=O44618 /GB=AAB94224.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071946 NCBI Caenorhabditis elegans Serpentine Receptor, class R family member (srr-4) (srr-4) mRNA, complete cds. 11/11 None
SNAP00000023420 ENSEMBL cdna:SNAP chromosome:CEL140:V:5020386:5022102:1 11/11 None
GENEFINDER00000023440 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5019571:5022102:1 11/11 None
K11D12.3 ENSEMBL cdna:known chromosome:CEL140:V:5019037:5022182:1 gene:K11D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5020385-5022102(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srr-4
Ensembl K11D12.3
Entrez Gene 187292 Entrez gene
SwissProt O44618 EMBL-EBI
WormBase CE30386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504347 Serpentine Receptor, class R family member (srr-4) [Caenorhabditis elegans] gb|AAB94224.2| Serpentine receptor, class r protein 4 [Caenorhabditis elegans] 0.0
blast CAE64047 Hypothetical protein CBG08645 [Caenorhabditis briggsae] 1.0E-178
blast CAE64047 Hypothetical protein CBG08645 [Caenorhabditis briggsae] 1.0E-173
blast CAE64046 Hypothetical protein CBG08644 [Caenorhabditis briggsae] 1.0E-79
blast CAE64046 Hypothetical protein CBG08644 [Caenorhabditis briggsae] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504347.2 7 57-79,94-116,150-167,187-209,266-288,292-314,360-382
K11D12.3 7 57-79,94-116,150-167,187-209,266-288,292-314,360-382
SNAP00000023420 7 52-74,89-111,145-162,182-204,261-283,287-309,355-377
GENEFINDER00000023440 7 84-106,121-143,177-194,214-236,293-315,319-341,387-409
Sequence
Target Sequence 
>C. ELEGANS:185864_AT
cgacatgtcttgctttttatgccctcttccagttttctatggtccgcgagactgagtatt
tcaacaaggaattgcaaaaggccagcgaggataagaagcttaaggatcccactgtaattg
ctgacttcagttaccgccagagagaacttttgaagctggttaatgaaacaaacgaattcc
ttcaaagctacgcaaaagtcgcaccacttttctgcttcttctccatcatcaatgccatct
tcaacctcagcttcttttcctttgtccccgttccatacgctattatgttggttttcctgt
tggcgtgcatcatcggaatgatcattctctctttgctaccagctgccaaagttcaagatc
aaattgttgcaacatcaaaaattttgatggaaagcgaagactttgaaaatgcggaaaatc
agaaagtataccaaacatataggctcatggtggaccgctcgctaaagtctgaaacgagaa
tctttgttgtgaacgcatttggaatcaactccaacaacttaaacattgccatgttcgtca
ttcctaacttgggtccactcttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACATGTCTTGCTTTTTATGCCCT 195 253 596 Antisense
CCTCTTCCAGTTTTCTATGGTCCGC 390 265 618 Antisense
GGATCCCACTGTAATTGCTGACTTC 655 511 699 Antisense
ATTGCTGACTTCAGTTACCGCCAGA 152 5 712 Antisense
AAAGCTACGCAAAAGTCGCACCACT 51 125 779 Antisense
CATCATCAATGCCATCTTCAACCTC 435 211 819 Antisense
TTTCCTGTTGGCGTGCATCATCGGA 697 669 888 Antisense
CATATAGGCTCATGGTGGACCGCTC 86 215 1031 Antisense
GGACCGCTCGCTAAAGTCTGAAACG 464 523 1047 Antisense
AACATTGCCATGTTCGTCATTCCTA 170 139 1117 Antisense
TTCCTAACTTGGGTCCACTCTTGAT 663 695 1136 Antisense
Sequence Source Affymetrix Proprietary Database