[Home] | [Total List]

[185863_at]

Description R10D12.11 /REP_DB=WormBase Gene ID /WP=CE12692 /TR=O17997 /GB=CAB03254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 26      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 21.6
(-2.2)
A 		47.3
(-0.7)
A 		6.4
(-3)
A 		114.2
(3)
P 		108
B 5
(-3)
A 		54.6
(2.5)
P 		41.5
(1.1)
P 		59
(3)
P 		54
C 6.2
(-3)
A 		51.5
(0.9)
P 		14.2
(-2.3)
A 		75.2
(3)
P 		69
avr 10.9
(-3) 		51.1
(0.4) 		20.7
(-2.2) 		82.8
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 54.1
(3)
A 		28.4
(-0.7)
A 		52.3
(2.7)
A 		12.1
(-3)
A 		32.9
(-0)
P 		35.4
(0.3)
A 		42
B 45.5
(3)
M 		34.3
(0.1)
P 		22.4
(-3)
A 		32.2
(-0.5)
A 		32
(-0.5)
P 		34.2
(0.1)
A 		23
C 35.9
(0.2)
A 		41
(1.1)
P 		17.3
(-3)
A 		52
(3)
A 		23.4
(-1.9)
A 		34.4
(-0)
M 		35
avr 45.2
(3) 		34.6
(-1) 		30.7
(-2.5) 		32.1
(-2) 		29.4
(-3) 		34.7
(-1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.9
(-0.5)
A 		10.3
(0.4)
A 		1.7
(-3)
A 		16.7
(3)
P 		15
B 1.6
(-3)
A 		13.5
(3)
P 		9.6
(1)
P 		12.6
(2.5)
P 		12
C 2.1
(-3)
A 		14.8
(3)
P 		5
(-1.6)
A 		12.7
(2)
P 		13
avr 3.9
(-3) 		12.9
(2.3) 		5.4
(-2.1) 		14
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10
(2)
A 		10.1
(2.1)
A 		11.4
(3)
A 		3.1
(-3)
A 		9.9
(1.9)
P 		8.6
(1)
A 		8
B 15.8
(3)
M 		11.4
(0.5)
P 		5.4
(-3)
A 		8.5
(-1.2)
A 		13
(1.4)
P 		12.8
(1.3)
A 		10
C 13.3
(3)
A 		12.5
(2.5)
P 		4.4
(-3)
A 		10.5
(1.1)
A 		7.6
(-0.8)
A 		11.5
(1.8)
M 		9
avr 13
(3) 		11.3
(1.3) 		7.1
(-3) 		7.4
(-2.7) 		10.2
(0.2) 		11
(1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13484
Sequence Type Exemplar sequence
Representative Public ID R10D12.11 NCBI
Target Description R10D12.11 /REP_DB=WormBase Gene ID /WP=CE12692 /TR=O17997 /GB=CAB03254.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074065 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-24) (srh-24) mRNA, complete cds. 11/11 None
GENEFINDER00000021073 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13961101:13964543:-1 11/11 None
R10D12.11 ENSEMBL cdna:known chromosome:CEL140:V:13961334:13963604:-1 gene:R10D12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13961481-13963604(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-24
Ensembl R10D12.11
Entrez Gene 187767 Entrez gene
SwissProt O17997 EMBL-EBI
WormBase CE38095 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03254 Hypothetical protein R10D12.11 [Caenorhabditis elegans] ref|NP_506466.2| Serpentine Receptor, class H family member (srh-24) [Caenorhabditis elegans] 0.0
blast CAE66181 Hypothetical protein CBG11419 [Caenorhabditis briggsae] 1.0E-127
blast CAB03254 Hypothetical protein R10D12.11 [Caenorhabditis elegans] ref|NP_506466.2| Serpentine Receptor, class H family member (srh-24) [Caenorhabditis elegans] 1.0E-122
blast CAE66181 Hypothetical protein CBG11419 [Caenorhabditis briggsae] 1.0E-100
blast CAB03253 Hypothetical protein R10D12.12 [Caenorhabditis elegans] ref|NP_506467.1| R10D12.12 [Caenorhabditis elegans] 2.0E-88
blast CAE64770 Hypothetical protein CBG09561 [Caenorhabditis briggsae] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.4E-124
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-72
Pfam IPR007235 EMBL-EBI Glycosyltransferase 28, C-terminal 8.4E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506466.2 7 10-30,43-65,80-102,132-151,187-209,235-257,272-291
R10D12.11 7 10-30,43-65,80-102,132-151,187-209,235-257,272-291
GENEFINDER00000021073 5 165-187,202-224,245-264,300-322,346-368
Sequence
Target Sequence 
>C. ELEGANS:185863_AT
atatcggagttccctatgacgttcagacgataataggatttggtacaggagttggaatgc
tttctgcatgtattcaaactattcaatatcgacacagtaaaatagttccaccgaatagta
tactggcaagaagttcgagaatcaaagcctttttgaattttgtcagatatttcttattct
gtcaagtttctcttcctgcagttatcacagaacctcgaaatcaaattgaagcgaaaatga
gagttgccgagaaatatcaattttatcccgacttcttcttcgatccaaaagtctatcttc
tccaagaaactccattttttgtatttgttccaggatccgttgttattttttatgtattca
ttgaactttctttttatattttacaaagttttcatcaactgaacaagaccaattctcaca
tgtctgaaagaacaaaaatgttgcagaaaaaatattttatttgcatttgtgtacaggttc
tcattccatttcttttctgcatttttcctatcgggttcttatgttttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCGGAGTTCCCTATGACGTTCA 458 19 257 Antisense
ATGCTTTCTGCATGTATTCAAACTA 364 43 313 Antisense
CTTATTCTGTCAAGTTTCTCTTCCT 73 223 429 Antisense
TTTCTCTTCCTGCAGTTATCACAGA 688 671 443 Antisense
TATCAATTTTATCCCGACTTCTTCT 114 661 511 Antisense
GATCCAAAAGTCTATCTTCTCCAAG 654 415 538 Antisense
ACTCCATTTTTTGTATTTGTTCCAG 221 97 565 Antisense
TTTGTTCCAGGATCCGTTGTTATTT 229 663 580 Antisense
TGCATTTGTGTACAGGTTCTCATTC 210 579 718 Antisense
TTTCTGCATTTTTCCTATCGGGTTC 78 671 750 Antisense
TCCTATCGGGTTCTTATGTTTTGCA 254 591 762 Antisense
Sequence Source Affymetrix Proprietary Database