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[185861_at]

Description T19H12.6 /REP_DB=WormBase Gene ID /WP=CE13762 /TR=O01610 /GB=AAC69031.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 4.9
(-3)
A 		206.1
(3)
A 		147.1
(1.2)
A 		41.7
(-1.9)
A 		201
B 23.4
(-2.5)
A 		192
(3)
A 		175.3
(2.5)
M 		6.5
(-3)
A 		186
C 15.8
(-2.8)
A 		213.8
(2.7)
M 		224.8
(3)
A 		7.7
(-3)
A 		217
avr 14.7
(-3) 		204
(3) 		182.4
(2.3) 		18.6
(-2.9) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 63
(-1.5)
A 		120.8
(3)
A 		90.7
(0.6)
A 		70.1
(-1)
A 		96.8
(1.1)
A 		44.3
(-3)
A 		77
B 50.2
(-2.9)
A 		152.6
(3)
A 		87.1
(-0.8)
A 		111
(0.6)
A 		98.8
(-0.1)
A 		48.2
(-3)
A 		104
C 9.2
(-3)
A 		137.1
(3)
A 		31
(-2)
A 		87.9
(0.7)
A 		129.3
(2.6)
A 		52.5
(-1)
A 		128
avr 40.8
(-3) 		136.8
(3) 		69.6
(-1.2) 		89.7
(0.1) 		108.3
(1.2) 		48.3
(-2.5) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 1.8
(-3)
A 		44.7
(3)
A 		38.4
(2.1)
A 		6.1
(-2.4)
A 		43
B 7.5
(-2.2)
A 		47.4
(3)
A 		40.6
(2.1)
M 		1.4
(-3)
A 		46
C 5.2
(-2.7)
A 		61.5
(1.7)
M 		78.4
(3)
A 		1.3
(-3)
A 		77
avr 4.8
(-2.8) 		51.2
(2.8) 		52.5
(3) 		2.9
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 11.6
(-2.9)
A 		43
(3)
A 		19.7
(-1.3)
A 		17.8
(-1.7)
A 		29.2
(0.4)
A 		10.8
(-3)
A 		32
B 17.5
(-3)
A 		50.8
(3)
A 		21.2
(-2.3)
A 		29.4
(-0.9)
A 		40.1
(1.1)
A 		18
(-2.9)
A 		33
C 3.4
(-3)
A 		41.8
(3)
A 		7.9
(-2.3)
A 		17.7
(-0.8)
A 		41.8
(3)
A 		17.6
(-0.8)
A 		38
avr 10.8
(-3) 		45.2
(3) 		16.3
(-2) 		21.6
(-1.1) 		37
(1.6) 		15.5
(-2.2) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15555
Sequence Type Exemplar sequence
Representative Public ID T19H12.6 NCBI
Target Description T19H12.6 /REP_DB=WormBase Gene ID /WP=CE13762 /TR=O01610 /GB=AAC69031.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071904 NCBI Caenorhabditis elegans T19H12.6 (T19H12.6) mRNA, complete cds. 11/11 None
SNAP00000027975 ENSEMBL cdna:SNAP chromosome:CEL140:V:4874166:4877487:-1 10/11 None
GENEFINDER00000027989 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4874166:4877468:-1 10/11 None
T19H12.6 ENSEMBL cdna:known chromosome:CEL140:V:4874737:4879106:-1 gene:T19H12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4874736-4879106(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19H12.6
Entrez Gene 188617 Entrez gene
SwissProt O01610 EMBL-EBI
WormBase CE13762 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3840 gamma-glutamyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69031 Hypothetical protein T19H12.6 [Caenorhabditis elegans] ref|NP_504305.1| T19H12.6 [Caenorhabditis elegans] 0.0
blast CAE64221 Hypothetical protein CBG08854 [Caenorhabditis briggsae] 0.0
blast AAC17783 Hypothetical protein H14N18.4a [Caenorhabditis elegans] ref|NP_741581.1| H14N18.4a [Caenorhabditis elegans] 7.0E-39
blast AAC17783 Hypothetical protein H14N18.4a [Caenorhabditis elegans] ref|NP_741581.1| H14N18.4a [Caenorhabditis elegans] 5.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 2.0E-14
Pfam IPR007026 EMBL-EBI CC domain 1.0E-16
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 4.6E-32
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 2.5E-10
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 5.9E-7
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 4.6E-32
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 2.5E-10
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 7.1E-8
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 4.6E-32
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 2.5E-10
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 5.9E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504305.1 1 100-122
T19H12.6 1 100-122
SNAP00000027975 1 36-58
GENEFINDER00000027989 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:185861_AT
gttgggtggttacatgacagcttcagatttggaagattatgaaagtgatatgagttcggc
aatctgcagtgaaattgatgtggatactaaagtttgtgggcctggatcgccgtcgtcgtt
tgcagtacttgcaaatacatatttggcaactaaaaatatgtcaaatctcgcgaaagtaaa
cgatgttctccgctcgagcatgggattaatcagtaaaatcgccgacccgatgttcgtgaa
atccagtaaaaaatacacggaggaactagctaaaacatcgaaaagatcaagttccgaggc
aaaaaatctagctgtaaatttcaaagaagatggttcaactgaagtatttgtaattgatga
gaacaatatgactgtcagcgttttgttgtcattgggtgatgattttggaagtttgatcta
ctcgtcttcaggattcttttggaataataaattgagatatttcgatgtgaaaaatgagaa
tgttccattgtcattgcaacctggaaaggtgccaacgtcgttgctgtcaccaattgttgt
agtcaagaataactcggtaggtgattctgctaagttccacttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGGTGGTTACATGACAGCTTCA 504 435 1251 Antisense
AAAGTTTGTGGGCCTGGATCGCCGT 252 123 1339 Antisense
TGTTCTCCGCTCGAGCATGGGATTA 522 561 1434 Antisense
TTAATCAGTAAAATCGCCGACCCGA 571 675 1456 Antisense
GCCGACCCGATGTTCGTGAAATCCA 707 283 1471 Antisense
ACTGTCAGCGTTTTGTTGTCATTGG 298 97 1621 Antisense
GATCTACTCGTCTTCAGGATTCTTT 694 419 1665 Antisense
ATGTTCCATTGTCATTGCAACCTGG 677 45 1730 Antisense
AGGTGCCAACGTCGTTGCTGTCACC 417 57 1757 Antisense
GTTGCTGTCACCAATTGTTGTAGTC 627 439 1770 Antisense
GGTGATTCTGCTAAGTTCCACTTAC 142 501 1810 Antisense
Sequence Source Affymetrix Proprietary Database