[Home] | [Total List]

[185859_at]

Description H34P18.1 /REP_DB=WormBase Gene ID /WP=CE19503 /TR=O76666 /GB=AAC26913.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 3
(-2.5)
A 		3
(-2.5)
A 		1.9
(-3)
A 		13.9
(3)
A 		12
B 4.3
(-1.3)
A 		2.8
(-2.4)
A 		1.9
(-3)
A 		10.6
(3)
A 		9
C 5.7
(-2.9)
A 		3.8
(-3)
A 		2.8
(-3)
A 		123.4
(3)
A 		121
avr 4.3
(-2.7) 		3.2
(-2.9) 		2.2
(-3) 		49.3
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.8
(-2.9)
A 		4.7
(-2.5)
A 		3.6
(-2.7)
A 		2.2
(-3)
A 		29.5
(3)
A 		3.4
(-2.7)
A 		27
B 3.3
(1.3)
A 		3.9
(3)
A 		2.1
(-2.1)
A 		3.2
(1)
A 		3.8
(2.7)
A 		1.8
(-3)
A 		2
C 3
(-1.5)
A 		6.9
(3)
A 		2.4
(-2.2)
A 		3.4
(-1)
A 		1.7
(-3)
A 		2.1
(-2.5)
A 		5
avr 3
(-2.6) 		5.2
(-1.2) 		2.7
(-2.8) 		2.9
(-2.7) 		11.7
(3) 		2.4
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.1
(-0.6)
A 		0.7
(-2.2)
A 		0.5
(-3)
A 		2
(3)
A 		2
B 1.4
(0.2)
A 		0.7
(-2.1)
A 		0.4
(-3)
A 		2.3
(3)
A 		2
C 1.9
(-2.7)
A 		1.1
(-3)
A 		1
(-3)
A 		20.8
(3)
A 		20
avr 1.5
(-2.3) 		0.8
(-2.8) 		0.6
(-3) 		8.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.7
(-2.1)
A 		0.8
(-2.8)
A 		0.6
(-2.9)
A 		8.9
(3)
A 		0.8
(-2.8)
A 		8
B 1.2
(1.2)
A 		1.3
(1.8)
A 		0.5
(-3)
A 		0.8
(-1.2)
A 		1.5
(3)
A 		0.7
(-1.8)
A 		1
C 1.1
(-0.8)
A 		2.1
(3)
A 		0.6
(-2.6)
A 		0.7
(-2.3)
A 		0.5
(-3)
A 		0.7
(-2.3)
A 		2
avr 0.9
(-2.4) 		1.7
(-0.8) 		0.6
(-3) 		0.7
(-2.8) 		3.6
(3) 		0.7
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12386
Sequence Type Exemplar sequence
Representative Public ID H34P18.1 NCBI
Target Description H34P18.1 /REP_DB=WormBase Gene ID /WP=CE19503 /TR=O76666 /GB=AAC26913.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072325 NCBI Caenorhabditis elegans H34P18.1 (H34P18.1) mRNA, complete cds. 11/11 None
H34P18.1 ENSEMBL cdna:known chromosome:CEL140:V:6807106:6809034:-1 gene:H34P18.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009754 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009763 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6807106-6809035(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H34P18.1
Entrez Gene 186799 Entrez gene
SwissProt O76666 EMBL-EBI
WormBase CE19503 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26913 Hypothetical protein H34P18.1 [Caenorhabditis elegans] ref|NP_504726.1| H34P18.1 [Caenorhabditis elegans] 0.0
blast AAB69965 Hypothetical protein T15B7.12 [Caenorhabditis elegans] ref|NP_504730.1| T15B7.12 [Caenorhabditis elegans] 1.0E-160
blast CAE71956 Hypothetical protein CBG19025 [Caenorhabditis briggsae] 1.0E-131
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504726.1 7 42-64,77-99,114-136,157-179,210-232,263-285,300-322
H34P18.1 7 42-64,77-99,114-136,157-179,210-232,263-285,300-322
Sequence
Target Sequence 
>C. ELEGANS:185859_AT
taatcaccacctttattcttttcatgaacgttgtgaaaaacaccgaggaagaaggaattc
atctagatatttctgatttatcgttgttcagtgaatgcttgtttctgaaaatttatttca
tagctagaaatacaatttttccgattgctccttgtgtcctaatgctaatattgtcgttta
cccttttgaaaaaatttgacgagggaaaacgcagtgcacaaaacgcagcagcaagccaaa
aagggaaaaaagataaaatcgaccgctcatctaggttcatccaatttgttctagtgatat
ttttaatcactgagtcaccacaaggagttttcaaaattcttagtggcattatgatgatag
attacataaactattttcaaaacttaacaatttttataaatattttggcattcttcaaca
gcaccacaagttttatcatttatagctcgttatctgctaaatttagaaaaatttttgctc
aacttttttttccaacccatattttggaaacaatctatttgaagcgaagcacgaatgtgg
ttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCACCACCTTTATTCTTTTCAT 673 635 524 Antisense
GTTGTTCAGTGAATGCTTGTTTCTG 107 439 606 Antisense
TACAATTTTTCCGATTGCTCCTTGT 706 641 654 Antisense
CTCCTTGTGTCCTAATGCTAATATT 347 235 671 Antisense
GCTAATATTGTCGTTTACCCTTTTG 184 303 687 Antisense
GACGAGGGAAAACGCAGTGCACAAA 385 379 721 Antisense
GCACAAAACGCAGCAGCAAGCCAAA 291 317 739 Antisense
ACCGCTCATCTAGGTTCATCCAATT 655 89 785 Antisense
GGTTCATCCAATTTGTTCTAGTGAT 448 507 797 Antisense
CATTCTTCAACAGCACCACAAGTTT 40 217 932 Antisense
GAAGCGAAGCACGAATGTGGTTCAT 115 343 1044 Antisense
Sequence Source Affymetrix Proprietary Database