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[185858_at]

Description Y95B8A.4 /REP_DB=WormBase Gene ID /WP=CE23146 /TR=Q9N2V5 /GB=AAF60900.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 11.8
(-3)
A 		57.5
(-0.4)
A 		21.1
(-2.5)
A 		116.5
(3)
A 		105
B 18.8
(-2.6)
A 		23.4
(-1.8)
A 		16.2
(-3)
A 		53.7
(3)
A 		38
C 16.5
(3)
A 		10.9
(-3)
A 		14.6
(1)
A 		13.6
(-0.1)
A 		6
avr 15.7
(-3) 		30.6
(-1) 		17.3
(-2.8) 		61.3
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 17.5
(-3)
A 		42.7
(-1.6)
A 		31.2
(-2.2)
A 		43.8
(-1.5)
A 		66.4
(-0.2)
A 		122.7
(3)
A 		105
B 13.9
(-2.3)
A 		19
(-1.8)
A 		47
(1.1)
A 		7.5
(-3)
A 		65.5
(3)
A 		61.7
(2.6)
A 		58
C 15.5
(-2.4)
A 		24.4
(-1.9)
A 		6
(-3)
A 		17
(-2.3)
A 		41.3
(-0.9)
A 		105.8
(3)
A 		100
avr 15.6
(-3) 		28.7
(-2) 		28.1
(-2.1) 		22.8
(-2.5) 		57.7
(0.1) 		96.7
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.3
(-3)
A 		12.5
(0.8)
A 		5.5
(-2.4)
A 		17.1
(3)
A 		13
B 6
(-1.2)
A 		5.8
(-1.4)
A 		3.7
(-3)
A 		11.5
(3)
A 		8
C 5.5
(3)
A 		3.1
(-1.5)
A 		5.1
(2.3)
A 		2.3
(-3)
A 		3
avr 5.3
(-2.5) 		7.1
(-0.5) 		4.8
(-3) 		10.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 3.2
(-3)
A 		15.2
(-0.3)
A 		6.8
(-2.2)
A 		11.1
(-1.2)
A 		20
(0.8)
A 		29.9
(3)
A 		27
B 4.8
(-2.3)
A 		6.3
(-2)
A 		11.4
(-0.7)
A 		2
(-3)
A 		26.6
(3)
A 		23
(2.1)
A 		25
C 5.7
(-2.3)
A 		7.4
(-2)
A 		1.5
(-3)
A 		3.4
(-2.7)
A 		13.4
(-0.9)
A 		35.4
(3)
A 		34
avr 4.6
(-3) 		9.6
(-1.8) 		6.6
(-2.5) 		5.5
(-2.8) 		20
(0.7) 		29.4
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15
Sequence Type Exemplar sequence
Representative Public ID Y95B8A.4 NCBI
Target Description Y95B8A.4 /REP_DB=WormBase Gene ID /WP=CE23146 /TR=Q9N2V5 /GB=AAF60900.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058390 NCBI Caenorhabditis elegans Y95B8A.4 (Y95B8A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000034288 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:909183:911135:1 11/11 None
Y95B8A.4 ENSEMBL cdna:known chromosome:CEL140:I:909375:911135:1 gene:Y95B8A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034257 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:909182-911135(+) 94.5 100.0
Public Domain and Genome References
Gene Title
Ensembl Y95B8A.4
Entrez Gene 190805 Entrez gene
SwissProt Q9N2V5 EMBL-EBI
WormBase CE36771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60900 Hypothetical protein Y95B8A.4 [Caenorhabditis elegans] ref|NP_490791.2| Y95B8A.4 [Caenorhabditis elegans] 1.0E-100
blast CAE71592 Hypothetical protein CBG18549 [Caenorhabditis briggsae] 6.0E-43
blast CAE71592 Hypothetical protein CBG18549 [Caenorhabditis briggsae] 1.0E-31
blast CAE71598 Hypothetical protein CBG18557 [Caenorhabditis briggsae] 5.0E-25
blast CAE71598 Hypothetical protein CBG18557 [Caenorhabditis briggsae] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490791.2 1 158-180
Y95B8A.4 1 158-180
GENEFINDER00000034288 1 222-244
Sequence
Target Sequence 
>C. ELEGANS:185858_AT
tgagactggtgccgaacaagctctgcgtgtccttgaattcaacaatacggaacactttct
tgtgatcaatttttggatgagaagctactatttcatgaaaaacggtgataaatatcagct
gtcatacaccggaaccaccatcaaacccgatttgaatcactttattcgcgtatacttcat
ctgcgctccagcgaacagtcagagtgcgttgatcgtgtttggggatcagtcgaaaccgcg
agttttaaagtcgaaaaaatcgaagagggaagcagcgctgattgatgagaattcggggaa
gaagctgaaaaagtgccagaaaattcggacgaaaagagcggcggcggtgaataactcgac
ggagtggacacagacgctgaaggatactcggagacttaaacaacgtagcgaaatctactc
ttgggcacgtctctcgttcattcacctcggtttcggtatggtagtgatcgtcaacgccat
cgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGACTGGTGCCGAACAAGCTCTG 265 569 246 Antisense
ACAAGCTCTGCGTGTCCTTGAATTC 649 111 261 Antisense
TATCAGCTGTCATACACCGGAACCA 621 659 358 Antisense
ATTCGCGTATACTTCATCTGCGCTC 548 9 409 Antisense
ATCTGCGCTCCAGCGAACAGTCAGA 30 35 424 Antisense
CAGAGTGCGTTGATCGTGTTTGGGG 65 207 445 Antisense
GGGGATCAGTCGAAACCGCGAGTTT 422 497 466 Antisense
AGCGGCGGCGGTGAATAACTCGACG 524 51 582 Antisense
TAGCGAAATCTACTCTTGGGCACGT 570 645 651 Antisense
TTCATTCACCTCGGTTTCGGTATGG 592 687 682 Antisense
TGGTAGTGATCGTCAACGCCATCGT 519 547 704 Antisense
Sequence Source Affymetrix Proprietary Database