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[185857_at]

Description H34C03.1 /REP_DB=WormBase Gene ID /WP=CE19499 /TR=Q9TYY7 /GB=AAC68976.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 73      6grp_total > 60      4grp_total > 06      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 44.5
(0.4)
P 		18
(-3)
A 		48.8
(0.9)
A 		64.9
(3)
A 		47
B 65.8
(2.2)
A 		26.2
(-3)
A 		34.2
(-1.9)
A 		71.7
(3)
P 		46
C 48.8
(2.3)
P 		13.4
(-3)
A 		19.9
(-2)
A 		53.6
(3)
A 		40
avr 53
(1.6) 		19.2
(-3) 		34.3
(-1) 		63.4
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 59.2
(-0.1)
M 		30.7
(-2.7)
A 		94.4
(3)
P 		94.4
(3)
P 		31.6
(-2.6)
P 		27.1
(-3)
A 		67
B 30.8
(-3)
A 		63.8
(-0.4)
P 		58.8
(-0.8)
P 		107.8
(3)
P 		50.8
(-1.4)
P 		67.1
(-0.2)
P 		77
C 43.9
(-3)
P 		63.9
(0.1)
P 		83.3
(3)
P 		62.6
(-0.1)
P 		43.7
(-3)
P 		54.6
(-1.3)
P 		40
avr 44.6
(-2.7) 		52.8
(-1.6) 		78.8
(1.8) 		88.3
(3) 		42
(-3) 		49.6
(-2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.2
(3)
P 		3.9
(-3)
A 		12.8
(1.3)
A 		9.5
(-0.3)
A 		12
B 21
(3)
A 		6.5
(-3)
A 		7.9
(-2.4)
A 		15.3
(0.6)
P 		15
C 16.1
(3)
P 		3.9
(-3)
A 		6.9
(-1.5)
A 		9
(-0.5)
A 		12
avr 17.8
(3) 		4.8
(-3) 		9.2
(-1) 		11.3
(0) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.9
(-1.5)
M 		10.9
(-1.5)
A 		20.5
(1.8)
P 		24
(3)
P 		9.5
(-2)
P 		6.6
(-3)
A 		17
B 10.7
(-3)
A 		21.2
(0.5)
P 		14.3
(-1.8)
P 		28.6
(3)
P 		20.6
(0.3)
P 		25
(1.8)
P 		18
C 16.3
(-0.4)
P 		19.5
(1.8)
P 		21.2
(3)
P 		12.6
(-3)
P 		14.1
(-2)
P 		18.3
(1)
P 		9
avr 12.6
(-3) 		17.2
(0) 		18.7
(1) 		21.7
(3) 		14.7
(-1.6) 		16.6
(-0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10260
Sequence Type Exemplar sequence
Representative Public ID H34C03.1 NCBI
Target Description H34C03.1 /REP_DB=WormBase Gene ID /WP=CE19499 /TR=Q9TYY7 /GB=AAC68976.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068635 NCBI Caenorhabditis elegans H34C03.1 (H34C03.1) mRNA, complete cds. 11/11 None
SNAP00000021136 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6762782:6765097:1 11/11 None
GENEFINDER00000021138 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6763576:6765097:1 11/11 None
H34C03.1 ENSEMBL cdna:known chromosome:CEL140:IV:6762700:6765166:1 gene:H34C03.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6762787-6765103(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H34C03.1
Entrez Gene 177438 Entrez gene
SwissProt Q9TYY7 EMBL-EBI
WormBase CE19499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68976 Hypothetical protein H34C03.1 [Caenorhabditis elegans] ref|NP_501036.1| H34C03.1 [Caenorhabditis elegans] 0.0
blast CAE61485 Hypothetical protein CBG05380 [Caenorhabditis briggsae] 1.0E-140
blast CAE61485 Hypothetical protein CBG05380 [Caenorhabditis briggsae] 1.0E-137
blast CAE61485 Hypothetical protein CBG05380 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501036.1 2 22-44,51-73
H34C03.1 2 22-44,51-73
SNAP00000021136 2 22-44,51-73
Sequence
Target Sequence 
>C. ELEGANS:185857_AT
actgcacttgcactagaagctattttggaaagattggaatctgaaagtgttactcaatca
gaagttgaatcagcattacataaaacttttcttgtcgtcaaggctgaaccagcatttcca
caacctgtgaagaaaattgatgtagaggtgaaaaatcaagatcaaaagaatccagaagtg
atcgttatcgagaagggcacaggagaaaggactgatatagatatggtattcgaaggaact
cccttatcagaagctgataaactatctgcttcaaaaagtgcagtagctcgagatgttctc
ctagatggatctgaaggacgttgtcatgaagcaagtctttttggagagctgaaaatggta
ttggagccacggaggacagattttgcgaaacgagaaaggactgcactggcaaagttctat
ggagttgatgagcatcaattggagcagaaggaagatgaagaaacatttgaagcgatagca
tctggtgatggtgaagatccggatccatatgactggaggaaggatgctgaaatgagtgca
gggattcatcatgatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCACTTGCACTAGAAGCTATTT 625 95 829 Antisense
TCTTGTCGTCAAGGCTGAACCAGCA 620 613 918 Antisense
GATCGTTATCGAGAAGGGCACAGGA 419 415 1008 Antisense
AGGAACTCCCTTATCAGAAGCTGAT 637 53 1062 Antisense
AGTGCAGTAGCTCGAGATGTTCTCC 305 59 1105 Antisense
GAGATGTTCTCCTAGATGGATCTGA 11 397 1118 Antisense
GGACGTTGTCATGAAGCAAGTCTTT 622 523 1144 Antisense
GGAGCCACGGAGGACAGATTTTGCG 77 523 1191 Antisense
GACTGCACTGGCAAAGTTCTATGGA 61 375 1227 Antisense
GAAGATCCGGATCCATATGACTGGA 296 337 1321 Antisense
GAGTGCAGGGATTCATCATGATGCT 524 401 1362 Antisense
Sequence Source Affymetrix Proprietary Database