[Home] | [Total List]

[185856_s_at]

Description T10B11.8 /REP_DB=WormBase Gene ID /WP=CE18247 /TR=Q9TZH5 /GB=AAC67463.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 14      6grp_total > 87      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 59.7
(-3)
P 		78.2
(-0.8)
A 		79.2
(-0.7)
P 		110.7
(3)
P 		51
B 75.7
(-1)
A 		81.5
(-0.5)
P 		56.7
(-3)
P 		115.1
(3)
P 		58
C 67.7
(-2.9)
P 		66.5
(-3)
P 		81.7
(-2.2)
P 		176.6
(3)
P 		110
avr 67.7
(-3) 		75.4
(-2.3) 		72.5
(-2.6) 		134.1
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 38.1
(-3)
A 		37.8
(-3)
M 		88.9
(-1.8)
P 		112.5
(-1.2)
P 		178.1
(0.4)
P 		284.5
(3)
P 		247
B 59.9
(-2.9)
A 		63.7
(-2.8)
P 		54.7
(-3)
P 		105.9
(-2)
P 		205.9
(-0)
P 		358.9
(3)
P 		304
C 29.6
(-3)
A 		95.8
(-1.8)
P 		75.8
(-2.1)
P 		171.7
(-0.3)
P 		156.4
(-0.6)
P 		348.5
(3)
P 		319
avr 42.5
(-3) 		65.8
(-2.5) 		73.1
(-2.4) 		130
(-1.2) 		180.1
(-0.1) 		330.6
(3) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 21.7
(3)
P 		17
(-2.1)
A 		20.7
(1.9)
P 		16.2
(-3)
P 		6
B 24.1
(2.8)
A 		20.1
(0.7)
P 		13.1
(-3)
P 		24.5
(3)
P 		11
C 22.4
(-1.1)
P 		19.1
(-3)
P 		28.5
(2.3)
P 		29.8
(3)
P 		11
avr 22.7
(2) 		18.7
(-3) 		20.8
(-0.4) 		23.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 7
(-3)
A 		13.4
(-2.4)
M 		19.4
(-1.8)
P 		28.5
(-0.9)
P 		53.7
(1.5)
P 		69.3
(3)
P 		62
B 20.8
(-2.6)
A 		21.2
(-2.6)
P 		13.3
(-3)
P 		28.1
(-2.3)
P 		83.7
(0.5)
P 		133.8
(3)
P 		121
C 11
(-3)
A 		29.2
(-2)
P 		19.3
(-2.5)
P 		34.5
(-1.7)
P 		50.6
(-0.8)
P 		116.7
(3)
P 		106
avr 12.9
(-3) 		21.3
(-2.5) 		17.3
(-2.7) 		30.4
(-1.9) 		62.7
(0.2) 		106.6
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185856_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.531
Sequence Type Exemplar sequence
Representative Public ID T10B11.8 NCBI
Target Description T10B11.8 /REP_DB=WormBase Gene ID /WP=CE18247 /TR=Q9TZH5 /GB=AAC67463.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059582(11), NM_182032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059582 NCBI Caenorhabditis elegans T10B11.8a (T10B11.8) mRNA, complete cds. 11/11 None
NM_182032 NCBI Caenorhabditis elegans T10B11.8b (T10B11.8) mRNA, complete cds. 11/11 None
GENEFINDER00000021324 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6960299:6961953:-1 11/11 None
T10B11.8a ENSEMBL cdna:known chromosome:CEL140:I:6960039:6962363:-1 gene:T10B11.8 11/11 None
T10B11.8b ENSEMBL cdna:known chromosome:CEL140:I:6960299:6961953:-1 gene:T10B11.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021316 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6960229-6961884(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.8
Entrez Gene 172425 Entrez gene
SwissProt Q9TZH5 EMBL-EBI
WormBase CE37405 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491983 T10B11.8a [Caenorhabditis elegans] gb|AAC67463.3| Hypothetical protein T10B11.8 [Caenorhabditis elegans] 0.0
blast NP_871832 T10B11.8b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185856_S_AT
gacgggagattttacacgcgctagagaagaaaagctcaatatgaaaaagaaaaagaagtc
gacatcttctggatcaaaatctgcctcaacttcaagtggatatcaatcaaacagccattc
ttcagattcttcatcttcttctgcccttctgatccacattcatcacaaccgaaacagcgt
gatctggagaatcgttataatcactatacgaacagtttcgataactatcgaatgggaaat
gagcagacaagtatacatagaaaaactgacaactaattctgaaaatttaatttcagcatc
ttatgatcatcatccaattccagtcaacgttcgtcgtctgtaccccttacaatctcataa
aaatataatcaaacaagatacctggccacatgagaaaaacaaagaaaagtacgatttcaa
tctgaaaaatgttgagaaaaagaatgactctaccaaatcggatcgtaaatcacatttttc
tgatgtttcgatatcgcttggatttggcaaagaagattggaatgagaaaaataaatcagt
gaaagatcttagcggaagatcgcatccaaaactccatttcggcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGGAGATTTTACACGCGCTAGA 517 377 657 Antisense
CTGGATCAAAATCTGCCTCAACTTC 247 241 725 Antisense
GATATCAATCAAACAGCCATTCTTC 96 427 755 Antisense
GCCATTCTTCAGATTCTTCATCTTC 608 281 770 Antisense
GATCCACATTCATCACAACCGAAAC 688 415 807 Antisense
TTATGATCATCATCCAATTCCAGTC 532 665 957 Antisense
TCCAGTCAACGTTCGTCGTCTGTAC 346 589 975 Antisense
TCTGTACCCCTTACAATCTCATAAA 17 609 993 Antisense
CAAACAAGATACCTGGCCACATGAG 558 189 1026 Antisense
GTTTCGATATCGCTTGGATTTGGCA 585 445 1141 Antisense
CGCATCCAAAACTCCATTTCGGCGT 261 255 1217 Antisense
Sequence Source Affymetrix Proprietary Database