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[185854_s_at]

Description T10B11.9 /REP_DB=WormBase Gene ID /WP=CE18248 /TR=Q9TZH4 /GB=AAC67470.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 24      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 41      6grp_total > 02      4grp_total > 39      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1313
1 2 3 4 range
A 1503.5
(3)
P 		482.2
(-2.5)
P 		398.4
(-3)
P 		623.8
(-1.8)
P 		1105
B 1374.4
(3)
P 		478.8
(-2.4)
P 		387.4
(-3)
P 		683
(-1.2)
P 		987
C 1700.2
(3)
P 		420.3
(-3)
P 		474.6
(-2.7)
P 		683.9
(-1.8)
P 		1280
avr 1526
(3) 		460.4
(-2.8) 		420.1
(-3) 		663.6
(-1.7) 		1106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 791.2
(1.5)
P 		876
(3)
P 		533
(-3)
P 		604.6
(-1.7)
P 		829.8
(2.2)
P 		553.4
(-2.6)
P 		343
B 790.4
(1.5)
P 		910.4
(3)
P 		431.5
(-3)
P 		641.9
(-0.4)
P 		709.4
(0.5)
P 		495.6
(-2.2)
P 		479
C 739.4
(1.1)
P 		856.8
(3)
P 		811.3
(2.3)
P 		481.3
(-3)
P 		720.3
(0.8)
P 		495.6
(-2.8)
P 		376
avr 773.7
(1.2) 		881.1
(3) 		591.9
(-1.7) 		575.9
(-2) 		753.2
(0.9) 		514.9
(-3) 		366
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 547.4
(3)
P 		104.7
(-2.8)
P 		104.1
(-2.8)
P 		91.3
(-3)
P 		456
B 438.3
(3)
P 		118.3
(-2.5)
P 		89.8
(-3)
P 		145.5
(-2)
P 		349
C 562.8
(3)
P 		120.8
(-2.9)
P 		165.4
(-2.3)
P 		115.3
(-3)
P 		448
avr 516.2
(3) 		114.6
(-3) 		119.8
(-2.9) 		117.4
(-3) 		402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 145.8
(-2.1)
P 		311.5
(3)
P 		116.1
(-3)
P 		153.3
(-1.9)
P 		250.4
(1.1)
P 		134.7
(-2.4)
P 		195
B 275
(2.2)
P 		303
(3)
P 		104.8
(-3)
P 		170
(-1)
P 		288.2
(2.6)
P 		184.8
(-0.6)
P 		198
C 274.1
(3)
P 		261.4
(2.6)
P 		206.5
(0.7)
P 		96.8
(-3)
P 		233.1
(1.6)
P 		165.9
(-0.7)
P 		177
avr 231.6
(0.6) 		292
(3) 		142.5
(-2.9) 		140
(-3) 		257.2
(1.6) 		161.8
(-2.1) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185854_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.634
Sequence Type Exemplar sequence
Representative Public ID T10B11.9 NCBI
Target Description T10B11.9 /REP_DB=WormBase Gene ID /WP=CE18248 /TR=Q9TZH4 /GB=AAC67470.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059583(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059583 NCBI Caenorhabditis elegans T10B11.9 (T10B11.9) mRNA, complete cds. 10/11 None
SNAP00000021317 ENSEMBL cdna:SNAP chromosome:CEL140:I:6962805:6964826:-1 10/11 None
GENEFINDER00000021323 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6962805:6964830:-1 10/11 None
T10B11.9 ENSEMBL cdna:known chromosome:CEL140:I:6962575:6964826:-1 gene:T10B11.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6962735-6964757(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.9
Entrez Gene 3564969 Entrez gene
SwissProt Q9TZH4 EMBL-EBI
WormBase CE30687 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491984 T10B11.9 [Caenorhabditis elegans] gb|AAC67470.2| Hypothetical protein T10B11.9 [Caenorhabditis elegans] 1.0E-160
blast CAE60343 Hypothetical protein CBG03935 [Caenorhabditis briggsae] 1.0E-142
blast CAE60343 Hypothetical protein CBG03935 [Caenorhabditis briggsae] 1.0E-141
blast XP_397264 PREDICTED: similar to ENSANGP00000022722 [Apis mellifera] 7.0E-22
blast XP_397264 PREDICTED: similar to ENSANGP00000022722 [Apis mellifera] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:185854_S_AT
acagaaaacatgtcccaacttcctccaactcctgagagccccatgcaaatgccacgtcag
catatgcaattacaacaagcaaatagtgctccatggcaacaacatacagttgttcaaaga
catggatcatctccattaacacccgtaaatcggcaaatgaatgtttatccagatatgtat
aacatgtctcaacaacaaaatcatcaagtccttcctaaccaacacggagtaattgggggt
caacgtccgccgaaaatgacaactacagtatcccagacacaccttttcgcaccttcgaca
gctgtttggggacactctgaattatccgttggacctgtgaatactgggttagttttaaaa
catttaattttggatatttcgaaaaatcattttgaaaaacaattacaatttccggattca
aagctttatcgaaattacattttcagatctgatgaaagtctagcagaagttcgttcacgt
gtacattttcatctttgcaacatatttccgcatgatttcgttgaatctgtgatggcagcc
aatccagaagaagtaaatgctccggtgctttgtgagctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGAAAACATGTCCCAACTTCCTC 233 109 319 Antisense
TAGTGCTCCATGGCAACAACATACA 393 653 402 Antisense
CATCTCCATTAACACCCGTAAATCG 34 213 446 Antisense
AAAATCATCAAGTCCTTCCTAACCA 551 529 515 Antisense
GGGTCAACGTCCGCCGAAAATGACA 477 1 555 Antisense
CACCTTCGACAGCTGTTTGGGGACA 9 201 608 Antisense
GACACTCTGAATTATCCGTTGGACC 531 367 629 Antisense
ATCCGTTGGACCTGTGAATACTGGG 82 37 642 Antisense
GTTCGTTCACGTGTACATTTTCATC 12 443 787 Antisense
GCAACATATTTCCGCATGATTTCGT 366 319 815 Antisense
ATGCTCCGGTGCTTTGTGAGCTCAT 94 43 875 Antisense
Sequence Source Affymetrix Proprietary Database