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[185852_s_at] 7TM chemoreceptor, str family /// 7TM chemoreceptor, str family

Description Y17G9A.7 /REP_DB=WormBase Gene ID /WP=CE21380 /TR=Q9N480 /GB=AAF60436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 11      6grp_cgc > 81      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 56.7
(-1.7)
A 		54.5
(-1.8)
A 		28.6
(-3)
A 		162.8
(3)
P 		134
B 57.4
(-0.2)
A 		61.2
(0.2)
A 		34.2
(-3)
A 		84.8
(3)
A 		51
C 27.5
(-2.8)
A 		71.4
(-1.6)
A 		19.3
(-3)
A 		238.9
(3)
P 		220
avr 47.2
(-2.1) 		62.4
(-1.4) 		27.4
(-3) 		162.2
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 75
(0.9)
A 		32.5
(-2.7)
A 		100.4
(3)
P 		29.6
(-3)
A 		29.3
(-3)
A 		33.1
(-2.7)
A 		71
B 44.4
(3)
A 		32.8
(-1.5)
A 		41.9
(2)
A 		29
(-3)
A 		41.4
(1.8)
A 		43.8
(2.8)
A 		15
C 26.9
(-2.1)
A 		82.7
(3)
M 		60.9
(1)
A 		32.8
(-1.6)
A 		17.2
(-3)
A 		22.2
(-2.5)
A 		66
avr 48.8
(0) 		49.3
(0.1) 		67.7
(3) 		30.5
(-2.8) 		29.3
(-3) 		33
(-2.4) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 20.6
(1.8)
A 		11.8
(-1.4)
A 		7.5
(-3)
A 		23.8
(3)
P 		16
B 18.3
(3)
A 		15.1
(1.2)
A 		7.9
(-3)
A 		18.1
(2.9)
A 		10
C 9.1
(-2.6)
A 		20.5
(-0.5)
A 		6.7
(-3)
A 		40.3
(3)
P 		34
avr 16
(-0.4) 		15.8
(-0.5) 		7.4
(-3) 		27.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.8
(-0.4)
A 		11.5
(-1.3)
A 		21.9
(3)
P 		7.5
(-3)
A 		8.8
(-2.5)
A 		8.1
(-2.8)
A 		14
B 15.4
(2.1)
A 		10.9
(-0.9)
A 		10.2
(-1.4)
A 		7.7
(-3)
A 		16.8
(3)
A 		16.3
(2.7)
A 		9
C 10
(-1.7)
A 		25.2
(3)
M 		15.5
(0)
A 		6.6
(-2.7)
A 		5.6
(-3)
A 		7.4
(-2.4)
A 		20
avr 13.1
(1) 		15.9
(3) 		15.9
(3) 		7.3
(-3) 		10.4
(-0.8) 		10.6
(-0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185852_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10500
Sequence Type Exemplar sequence
Representative Public ID Y17G9A.7 NCBI
Target Description Y17G9A.7 /REP_DB=WormBase Gene ID /WP=CE21380 /TR=Q9N480 /GB=AAF60436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068260(11), NM_068261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068260 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-175) (str-175) mRNA, complete cds. 11/11 None
NM_068261 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-174) (str-174) mRNA, complete cds. 11/11 A 
SNAP00000012349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4872257:4874573:-1 11/11 None
GENEFINDER00000012351 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4867831:4870516:-1 11/11 None
GENEFINDER00000012356 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4872257:4874573:-1 11/11 None
Y17G9A.6 ENSEMBL cdna:known chromosome:CEL140:IV:4868599:4870636:-1 gene:Y17G9A.6 11/11 None
Y17G9A.7 ENSEMBL cdna:known chromosome:CEL140:IV:4872257:4874573:-1 gene:Y17G9A.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012348 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4872262-4874579(-) 100.0 100.0
chrIV:4868749-4870522(-) 97.35 97.35
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
7TM chemoreceptor, str family
Gene Symbol str-175
str-174
Ensembl Y17G9A.6
Y17G9A.7
Entrez Gene 189463 Entrez gene
189464 Entrez gene
SwissProt Q9N481 EMBL-EBI
Q9N480 EMBL-EBI
WormBase CE35063 Wormbase
CE38235 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 0.0
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 0.0
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 1.0E-176
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 1.0E-176
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.7E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.3E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.1E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.0E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.0E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500661.2 7 12-34,47-69,93-115,135-152,205-227,255-277,287-309
NP_500662.2 7 12-34,47-69,93-115,135-152,205-227,255-277,287-309
Y17G9A.6 7 12-34,47-69,93-115,135-152,205-227,255-277,287-309
Y17G9A.7 6 7-29,53-75,95-112,165-187,215-237,247-269
SNAP00000012349 6 7-29,53-75,95-112,165-187,215-237,247-269
GENEFINDER00000012351 6 7-29,53-75,95-112,165-187,215-237,247-269
GENEFINDER00000012356 6 7-29,53-75,95-112,165-187,215-237,247-269
Sequence
Target Sequence 
>C. ELEGANS:185852_S_AT
aatatctcgtgttctggttcacaattccattgcttggcggagcagcttggtacgccgtta
cagaatgttgtctcacaccggatcaattgggaattgaatacattagagcaactgtgaaag
aatcgttcagcattgaaatggaaaatgccgagtacacaggatgtgtattctatccactag
acactgatggaaaacagtttataaattggcgtagtttcatgggatatactggatacttga
gcattatggcagttgcatttttaattatttcatttgctggatgtaaaagttgttatctgg
tcagtaacttgttggatcaaggagaatccgaattctccaagaatctacaaatgcaattgt
acaaggcattagtagctcagacagtcatccctgttgtattgctctttattccatttggac
tcctattcactcttccaattttcgagattaactgtcagtttcttgcaactattataactt
tgatatttgcaatttacccagctgtcgatccattgccaattctttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATCTCGTGTTCTGGTTCACAAT 710 173 290 Antisense
GGTTCACAATTCCATTGCTTGGCGG 225 507 305 Antisense
TGCTTGGCGGAGCAGCTTGGTACGC 282 579 320 Antisense
GCAGCTTGGTACGCCGTTACAGAAT 648 295 331 Antisense
AATTGGCGTAGTTTCATGGGATATA 208 177 493 Antisense
GGATACTTGAGCATTATGGCAGTTG 699 509 520 Antisense
ATCTGGTCAGTAACTTGTTGGATCA 61 35 584 Antisense
GAATCCGAATTCTCCAAGAATCTAC 430 327 613 Antisense
TCACTCTTCCAATTTTCGAGATTAA 605 625 716 Antisense
TAACTGTCAGTTTCTTGCAACTATT 364 637 738 Antisense
GTCGATCCATTGCCAATTCTTTATT 668 473 793 Antisense
Sequence Source Affymetrix Proprietary Database