[Home] | [Total List]

[185851_at] 7TM chemoreceptor, str family

Description Y17G9A.7 /REP_DB=WormBase Gene ID /WP=CE21380 /TR=Q9N480 /GB=AAF60436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 04      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 40.1
(-2.1)
A 		21.1
(-3)
A 		34.1
(-2.4)
A 		153.2
(3)
P 		132
B 71.2
(2)
P 		28.2
(-3)
A 		31.9
(-2.6)
A 		80.3
(3)
P 		52
C 41.3
(-2.5)
P 		33.6
(-2.9)
P 		30.9
(-3)
A 		156.5
(3)
P 		126
avr 50.9
(-1.6) 		27.6
(-3) 		32.3
(-2.7) 		130
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 52
(1.1)
A 		37.9
(-0.3)
A 		70.9
(3)
P 		43
(0.2)
P 		11.6
(-3)
A 		27.1
(-1.4)
A 		59
B 27.5
(-3)
A 		35.4
(-0.6)
A 		36.6
(-0.2)
A 		28.6
(-2.7)
A 		46.9
(3)
P 		32.8
(-1.4)
A 		19
C 18.7
(-1.7)
A 		48
(3)
A 		16.2
(-2.1)
A 		25.1
(-0.7)
A 		28.8
(-0.1)
A 		10.5
(-3)
A 		38
avr 32.7
(0.1) 		40.4
(2.7) 		41.2
(3) 		32.2
(-0.1) 		29.1
(-1.1) 		23.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.6
(0.4)
A 		4.6
(-3)
A 		8.9
(-1.6)
A 		22.4
(3)
P 		18
B 22.7
(3)
P 		7
(-3)
A 		7.4
(-2.8)
A 		17.1
(0.9)
P 		16
C 13.7
(-1.6)
P 		9.7
(-3)
P 		10.8
(-2.6)
A 		26.4
(3)
P 		17
avr 17
(1) 		7.1
(-3) 		9
(-2.2) 		22
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.6
(0.1)
A 		13.5
(2)
A 		15.4
(3)
P 		10.9
(0.7)
P 		3.5
(-3)
A 		6.6
(-1.4)
A 		12
B 9.6
(-2)
A 		11.8
(-0.8)
A 		8.9
(-2.3)
A 		7.6
(-3)
A 		19.1
(3)
P 		12.2
(-0.6)
A 		12
C 6.9
(-1.2)
A 		14.6
(3)
A 		4.1
(-2.7)
A 		5.1
(-2.1)
A 		9.3
(0.1)
A 		3.5
(-3)
A 		11
avr 8.7
(-1.7) 		13.3
(3) 		9.5
(-0.9) 		7.9
(-2.5) 		10.6
(0.3) 		7.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10500
Sequence Type Exemplar sequence
Representative Public ID Y17G9A.7 NCBI
Target Description Y17G9A.7 /REP_DB=WormBase Gene ID /WP=CE21380 /TR=Q9N480 /GB=AAF60436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068261 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-174) (str-174) mRNA, complete cds. 11/11 A 
SNAP00000012349 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4872257:4874573:-1 11/11 None
GENEFINDER00000012356 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4872257:4874573:-1 11/11 None
Y17G9A.7 ENSEMBL cdna:known chromosome:CEL140:IV:4872257:4874573:-1 gene:Y17G9A.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4872262-4874579(-) 100.0 100.0
chrIV:4868749-4870522(-) 97.35 97.35
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-174
Ensembl Y17G9A.7
Entrez Gene 189464 Entrez gene
SwissProt Q9N480 EMBL-EBI
WormBase CE38235 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 0.0
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 0.0
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 1.0E-176
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 1.0E-173
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 1.0E-171
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 1.0E-168
blast NP_500659 Seven TM Receptor family member (str-173) [Caenorhabditis elegans] gb|AAF60438.2| Seven tm receptor protein 173 [Caenorhabditis elegans] 1.0E-102
blast CAE66404 Hypothetical protein CBG11671 [Caenorhabditis briggsae] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.1E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.0E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500662.2 7 12-34,47-69,93-115,135-152,205-227,255-277,287-309
Y17G9A.7 6 7-29,53-75,95-112,165-187,215-237,247-269
SNAP00000012349 6 7-29,53-75,95-112,165-187,215-237,247-269
GENEFINDER00000012356 6 7-29,53-75,95-112,165-187,215-237,247-269
Sequence
Target Sequence 
>C. ELEGANS:185851_AT
acgccgttacagaatgttgtctcacaccggatcaattgggaattgaatacattagagcaa
ctgtgaaagaatcgttcagcattgaaatggaaaatgccgagtacacaggatgtgtattct
atccactagacactgatggaaaacagtttataaattggcgtagtttcatgggatatactg
gatacttgagcattatggcagttgcatttttaattatttcatttgctggatgtaaaagtt
gttatctggtcagtaacttgttggatcaaggagaatccgaattctccaagaatctacaaa
tgcaattgtacaaggcattagtagctcagacagtcatccctgttgtattgctctttattc
catttggactcctattcactcttccaattttcgagattaactgtcagtttcttgcaacta
ttataactttgatatttgcaatttacccagctgtcgatccattgccaattctttattttg
tggaatactatcgaattccaattttggaagtgttcaagaaaccacattgcagtggcagtc
aagtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCCGTTACAGAATGTTGTCTCAC 441 91 341 Antisense
GTTACAGAATGTTGTCTCACACCGG 653 445 346 Antisense
ACAGAATGTTGTCTCACACCGGATC 647 107 349 Antisense
GAAATGGAAAATGCCGAGTACACAG 152 361 424 Antisense
AAAATGCCGAGTACACAGGATGTGT 467 133 431 Antisense
TATTCTATCCACTAGACACTGATGG 662 663 455 Antisense
CTCAGACAGTCATCCCTGTTGTATT 377 229 665 Antisense
ACAGTCATCCCTGTTGTATTGCTCT 44 109 670 Antisense
TTTATTCCATTTGGACTCCTATTCA 18 675 694 Antisense
TTCCATTTGGACTCCTATTCACTCT 537 699 698 Antisense
CACATTGCAGTGGCAGTCAAGTATA 582 195 863 Antisense
Sequence Source Affymetrix Proprietary Database