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[185850_at]

Description Y38H6C.10 /REP_DB=WormBase Gene ID /WP=CE19104 /TR=Q9XX51 /GB=CAA20988.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 112
(3)
A 		65.1
(-1)
A 		41.2
(-3)
A 		70
(-0.6)
A 		71
B 100.6
(3)
A 		77.6
(-1.6)
A 		70.3
(-3)
A 		92.4
(1.4)
A 		30
C 72.2
(-0.5)
A 		60.8
(-3)
A 		84.4
(2.2)
A 		87.8
(3)
A 		27
avr 94.9
(3) 		67.8
(-2.5) 		65.3
(-3) 		83.4
(0.7) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 97.8
(0.6)
A 		115.3
(2.2)
A 		72.6
(-1.6)
A 		124.8
(3)
A 		56.6
(-3)
A 		110.3
(1.7)
A 		68
B 126.3
(3)
A 		90.3
(-0.1)
A 		112.9
(1.9)
A 		55.8
(-3)
A 		90.1
(-0.1)
A 		65.1
(-2.2)
A 		71
C 144.3
(3)
P 		63.6
(-1.9)
A 		94.1
(-0)
A 		105.8
(0.7)
A 		45
(-3)
A 		91.9
(-0.2)
A 		99
avr 122.8
(3) 		89.7
(-0.4) 		93.2
(-0) 		95.5
(0.2) 		63.9
(-3) 		89.1
(-0.4) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 40.8
(3)
A 		14.1
(-2.2)
A 		10.8
(-2.9)
A 		10.2
(-3)
A 		31
B 32.1
(3)
A 		19.2
(-1.9)
A 		16.3
(-3)
A 		19.7
(-1.7)
A 		16
C 23.9
(0.7)
A 		17.5
(-1.9)
A 		29.4
(3)
A 		14.8
(-3)
A 		15
avr 32.3
(3) 		16.9
(-2.3) 		18.8
(-1.7) 		14.9
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 18
(-2.5)
A 		41
(3)
A 		15.8
(-3)
A 		31.7
(0.8)
A 		17.1
(-2.7)
A 		26.9
(-0.4)
A 		25
B 43.9
(3)
A 		30.1
(0.2)
A 		27.4
(-0.4)
A 		14.8
(-3)
A 		36.6
(1.5)
A 		24.3
(-1)
A 		29
C 53.5
(3)
P 		19.4
(-2.3)
A 		24
(-1.6)
A 		21.3
(-2)
A 		14.6
(-3)
A 		30.8
(-0.5)
A 		39
avr 38.5
(3) 		30.2
(-0.1) 		22.4
(-3) 		22.6
(-2.9) 		22.8
(-2.9) 		27.3
(-1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13010
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.10 NCBI
Target Description Y38H6C.10 /REP_DB=WormBase Gene ID /WP=CE19104 /TR=Q9XX51 /GB=CAA20988.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075551 NCBI Caenorhabditis elegans Y38H6C.10 (Y38H6C.10) mRNA, complete cds. 11/11 None
SNAP00000041321 ENSEMBL cdna:SNAP chromosome:CEL140:V:20514351:20516087:-1 11/11 None
GENEFINDER00000041350 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20514351:20516087:-1 11/11 None
Y38H6C.10 ENSEMBL cdna:known chromosome:CEL140:V:20514351:20516087:-1 gene:Y38H6C.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20514350-20516087(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.10
Entrez Gene 189691 Entrez gene
SwissProt Q9XX51 EMBL-EBI
WormBase CE19104 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20988 Hypothetical protein Y38H6C.10 [Caenorhabditis elegans] ref|NP_507952.1| Y38H6C.10 [Caenorhabditis elegans] 0.0
blast CAA20990 Hypothetical protein Y38H6C.11 [Caenorhabditis elegans] ref|NP_507954.1| Y38H6C.11 [Caenorhabditis elegans] 1.0E-57
blast CAA20989 Hypothetical protein Y38H6C.9 [Caenorhabditis elegans] ref|NP_507953.1| Y38H6C.9 [Caenorhabditis elegans] 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.3E-5
Sequence
Target Sequence 
>C. ELEGANS:185850_AT
gatcaactcaccgtaacattatgccaattttggtctccgaacttgcaaggactggcgtca
aaatccgagccaaggagctctgggtcaggagcaatcaggccgcttacaagtggatcggaa
aagtcctgaaagcttttgaaccggggcacctggaaaagatcgcagtgggccgtatctcag
gaaaggactacgcggagattaagaacaccgagcagttcaaggcctgcaaacaatatatgc
tcatcgcagaaactggacctggatgctgtgatgcggagaagcttgaagtttcgatgcaag
ttctaagaccggatgaagcgtggaaagtgattacaagcttccgtgcaagatccaacttgc
ccctcggatcgttcttcaaaatctccaccggccaagaatggaaaattcaagattttctca
aggaattcgatgttccggctgtccatcatcctcatcgttatgatcaacaccattatgttt
cacaccgccaagcgttcgacatggaagatgagacaaaagtattggtgatcacactttgga
cgtcacacgagcacagcgagctttgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAACTCACCGTAACATTATGCC 674 421 428 Antisense
GCCAATTTTGGTCTCCGAACTTGCA 701 275 450 Antisense
GTCAGGAGCAATCAGGCCGCTTACA 12 467 511 Antisense
TCGCAGTGGGCCGTATCTCAGGAAA 413 599 587 Antisense
ACTGGACCTGGATGCTGTGATGCGG 710 95 679 Antisense
ACAAGCTTCCGTGCAAGATCCAACT 423 113 760 Antisense
GGATCGTTCTTCAAAATCTCCACCG 490 511 793 Antisense
CAACACCATTATGTTTCACACCGCC 213 189 892 Antisense
CACCGCCAAGCGTTCGACATGGAAG 136 201 910 Antisense
ATCACACTTTGGACGTCACACGAGC 429 27 955 Antisense
CACACGAGCACAGCGAGCTTTGCGG 540 195 971 Antisense
Sequence Source Affymetrix Proprietary Database