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[185849_s_at]

Description C23F12.1 /REP_DB=WormBase Gene ID /WP=CE27802 /TR=P90749 /GB=AAB37033.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 535
1 2 3 4 range
A 804.9
(3)
P 		408.5
(-2.2)
P 		352
(-3)
P 		349.8
(-3)
P 		455
B 788.3
(3)
P 		406.9
(-1.6)
P 		335.8
(-2.5)
P 		295.8
(-3)
P 		493
C 689.4
(3)
P 		386.2
(-1.3)
P 		357.3
(-1.7)
P 		269.9
(-3)
P 		420
avr 760.9
(3) 		400.5
(-1.7) 		348.4
(-2.4) 		305.2
(-3) 		456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 687
1 2 3 4 5 6 range
A 719.9
(2.5)
P 		761.4
(3)
P 		245.7
(-3)
P 		370.7
(-1.5)
P 		351.7
(-1.8)
P 		339.2
(-1.9)
P 		516
B 670.7
(3)
P 		501.8
(0.5)
P 		300.5
(-2.5)
P 		290.1
(-2.7)
P 		323.3
(-2.2)
P 		267.4
(-3)
P 		403
C 908.5
(3)
P 		482.4
(-0.7)
P 		564
(-0)
P 		221.5
(-3)
P 		435.4
(-1.1)
P 		273.9
(-2.5)
P 		687
avr 766.4
(3) 		581.9
(0.7) 		370.1
(-2) 		294.1
(-3) 		370.1
(-2) 		293.5
(-3) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 293.1
(3)
P 		88.7
(-2.1)
P 		92
(-2)
P 		51.2
(-3)
P 		242
B 251.4
(3)
P 		100.5
(-1.8)
P 		77.8
(-2.5)
P 		63
(-3)
P 		188
C 228.2
(3)
P 		111
(-0.8)
P 		124.5
(-0.4)
P 		45.5
(-3)
P 		183
avr 257.6
(3) 		100.1
(-1.6) 		98.1
(-1.7) 		53.2
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 132.7
(-0.8)
P 		270.8
(3)
P 		53.5
(-3)
P 		94
(-1.9)
P 		106.1
(-1.5)
P 		82.6
(-2.2)
P 		217
B 233.4
(3)
P 		167
(0.5)
P 		73
(-3)
P 		76.8
(-2.9)
P 		131.4
(-0.8)
P 		99.7
(-2)
P 		160
C 336.8
(3)
P 		147.2
(-0.9)
P 		143.5
(-1)
P 		44.5
(-3)
P 		140.9
(-1)
P 		91.7
(-2)
P 		292
avr 234.3
(3) 		195
(1.5) 		90
(-2.3) 		71.8
(-3) 		126.1
(-1) 		91.3
(-2.3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185849_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16633
Sequence Type Exemplar sequence
Representative Public ID C23F12.1 NCBI
Target Description C23F12.1 /REP_DB=WormBase Gene ID /WP=CE27802 /TR=P90749 /GB=AAB37033.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077180(11), NM_077179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077180 NCBI Caenorhabditis elegans C23F12.1b (C23F12.1) mRNA, complete cds. 11/11 A 
NM_077179 NCBI Caenorhabditis elegans C23F12.1a (C23F12.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000029676 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9418029:9426613:1 11/11 None
SNAP00000029669 ENSEMBL cdna:SNAP chromosome:CEL140:X:9420693:9426613:1 11/11 None
C23F12.1a ENSEMBL cdna:known chromosome:CEL140:X:9412606:9426613:1 gene:C23F12.1 11/11 A 
C23F12.1b ENSEMBL cdna:known chromosome:CEL140:X:9412606:9427184:1 gene:C23F12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9412605-9424910(+) 99.6 100.0
Public Domain and Genome References
Ensembl C23F12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN60532 Hypothetical protein C23F12.1b [Caenorhabditis elegans] ref|NP_509581.2| C23F12.1b [Caenorhabditis elegans] 0.0
blast CAE69823 Hypothetical protein CBG16142 [Caenorhabditis briggsae] 0.0
blast AAN60531 Hypothetical protein C23F12.1a [Caenorhabditis elegans] ref|NP_509580.2| C23F12.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.Helicase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Helicase DNA-binding domain 1.70000004768372
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 9.1E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 4.2E-14
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.6E-13
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 9.1E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.6E-13
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-18
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.7E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.2E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-28
Sequence
Target Sequence 
>C. ELEGANS:185849_S_AT
ggatctccactacgcacagaaatgctcaaatctcctggtggcgaagaccgtattactttc
ttgccaaaccaaactggaccccacaagattaatgtgaaggttgctggattccagatccct
ggatatccacaaacaatattggttagcgagcaagaaaaaccagcggtttatggtgctgct
gttgatcaatcgatcaagatcggagagccggcttctctgattttcgatccaaaaaagaca
aatggaggactcaaaattcacgcaacaggtccagatggacaaaaagtgcaccacaacgta
atgcgtagaccaaatggcacatcagaagttgtcttctatcctgaggaaactggaacttac
aatgtcagcattgacttcaataaccgtccaatcaccggaagcccattcaccgtgaatgtt
gtcgacccaaccaaggtcattgttaacgacctagacatggatcgcgatggaactcttctc
ctcagacttggtcactcgaactcatttgatgttgacgcgacggcagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTCCACTACGCACAGAAATGC 402 511 6349 Antisense
AATGCTCAAATCTCCTGGTGGCGAA 111 167 6369 Antisense
GAAGACCGTATTACTTTCTTGCCAA 341 339 6391 Antisense
GGTTGCTGGATTCCAGATCCCTGGA 646 507 6447 Antisense
GCGGTTTATGGTGCTGCTGTTGATC 426 287 6511 Antisense
GGCTTCTCTGATTTTCGATCCAAAA 663 537 6558 Antisense
GAAGTTGTCTTCTATCCTGAGGAAA 433 337 6673 Antisense
GACTTCAATAACCGTCCAATCACCG 15 373 6721 Antisense
TTCACCGTGAATGTTGTCGACCCAA 300 683 6754 Antisense
AGACTTGGTCACTCGAACTCATTTG 512 69 6832 Antisense
ATTTGATGTTGACGCGACGGCAGCC 403 17 6852 Antisense
Sequence Source Affymetrix Proprietary Database