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[185848_at]

Description C24A11.2 /REP_DB=WormBase Gene ID /WP=CE08343 /TR=P91087 /GB=AAB37672.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 94.7
(1.8)
P 		94.8
(1.8)
A 		49.5
(-3)
A 		106.3
(3)
P 		57
B 108.5
(3)
P 		104.2
(2.4)
M 		62.2
(-3)
A 		70
(-2)
P 		46
C 96.3
(-1)
P 		69
(-2.7)
A 		63.5
(-3)
A 		160.7
(3)
P 		97
avr 99.8
(1.6) 		89.3
(0.4) 		58.4
(-3) 		112.3
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 11.1
(-3)
A 		75.8
(1)
P 		108.9
(3)
P 		61.6
(0.1)
M 		63.9
(0.2)
A 		82.1
(1.4)
M 		98
B 63.8
(-1.1)
A 		73.2
(-0.3)
P 		56.1
(-1.7)
A 		51.4
(-2.1)
A 		41.3
(-3)
P 		111.2
(3)
P 		70
C 36
(-2.3)
A 		109.7
(2.2)
P 		83.2
(0.6)
P 		105.9
(1.9)
A 		24.9
(-3)
A 		123.3
(3)
P 		98
avr 37
(-3) 		86.2
(1.3) 		82.7
(1) 		73
(0.2) 		43.4
(-2.4) 		105.5
(3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 34.5
(3)
P 		20.6
(-0.9)
A 		12.9
(-3)
A 		15.6
(-2.3)
P 		22
B 34.6
(3)
P 		25.7
(0.4)
M 		14.4
(-3)
A 		14.9
(-2.9)
P 		20
C 31.9
(3)
P 		19.8
(-3)
A 		22.1
(-1.9)
A 		27.1
(0.6)
P 		12
avr 33.7
(3) 		22
(-1.1) 		16.5
(-3) 		19.2
(-2.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 2
(-3)
A 		27
(3)
P 		23.7
(2.2)
P 		15.6
(0.3)
M 		19.3
(1.2)
A 		20
(1.3)
M 		25
B 22.2
(-1.2)
A 		24.4
(-0.7)
P 		13.6
(-3)
A 		13.6
(-3)
A 		16.8
(-2.3)
P 		41.5
(3)
P 		28
C 13.3
(-2.1)
A 		33.5
(1.6)
P 		21.2
(-0.6)
P 		21.3
(-0.6)
A 		8.1
(-3)
A 		41.3
(3)
P 		33
avr 12.5
(-3) 		28.3
(1.3) 		19.5
(-1.1) 		16.8
(-1.8) 		14.7
(-2.4) 		34.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2249
Sequence Type Exemplar sequence
Representative Public ID C24A11.2 NCBI
Target Description C24A11.2 /REP_DB=WormBase Gene ID /WP=CE08343 /TR=P91087 /GB=AAB37672.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059181(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059181 NCBI Caenorhabditis elegans C24A11.2 (C24A11.2) mRNA, complete cds. 11/11 None
C24A11.2 ENSEMBL cdna:known chromosome:CEL140:I:5380163:5383032:1 gene:C24A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5381182-5383032(+) 96.43 96.43
Public Domain and Genome References
Gene Title
Ensembl C24A11.2
Entrez Gene 182832 Entrez gene
SwissProt P91087 EMBL-EBI
WormBase CE08343 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37672 Hypothetical protein C24A11.2 [Caenorhabditis elegans] ref|NP_491582.1| C24A11.2 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491582.1 2 36-58,140-157
C24A11.2 2 36-58,140-157
Sequence
Target Sequence 
>C. ELEGANS:185848_AT
atgccattgtcgtctttcaaaggaagtatttttggaaaattaaaaacctcctttcaagtg
gtcagcgaccaatcagcaaagtatggggcggagccaactccgcttattggtcaacctgct
tttttaggtgcgaaattcgaaatttttggagttttttctctttatttattctttagaatt
ttgacatttaagcatcaaagcatgggatggttgccgcatggcgcaatttgcacagcctat
atcgccatatttgaacagatttcacacagttttcctccgattaacgaaaacaatataaaa
atgagaaatagtgttggagatgaggagagctcagagacaaaatgtaaaaaaaaagtttgt
ggaatttttcaaagctggctccacccactgagaaatcgagagatcgatcgaatgaataat
atatacatctacagtctagaaattcaattgattgtcgtcatagtgtttttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCATTGTCGTCTTTCAAAGGAA 529 41 13 Antisense
AAACCTCCTTTCAAGTGGTCAGCGA 625 123 56 Antisense
GGTCAGCGACCAATCAGCAAAGTAT 169 503 72 Antisense
GAGCCAACTCCGCTTATTGGTCAAC 298 385 103 Antisense
GGTCAACCTGCTTTTTTAGGTGCGA 672 499 121 Antisense
AGCATGGGATGGTTGCCGCATGGCG 22 79 211 Antisense
GCCGCATGGCGCAATTTGCACAGCC 535 285 225 Antisense
GCACAGCCTATATCGCCATATTTGA 446 317 242 Antisense
TGGAATTTTTCAAAGCTGGCTCCAC 193 547 372 Antisense
TGGCTCCACCCACTGAGAAATCGAG 369 545 388 Antisense
GATTGTCGTCATAGTGTTTTTGGAA 381 435 462 Antisense
Sequence Source Affymetrix Proprietary Database