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[185847_at]

Description H18N23.1 /REP_DB=WormBase Gene ID /WP=CE23810 /TR=Q9N5M4 /GB=AAF39884.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 31.4
(-0.5)
A 		5.8
(-3)
A 		5.6
(-3)
A 		66.9
(3)
A 		61
B 15.4
(-1.5)
A 		10
(-2.3)
A 		4.8
(-3)
A 		47.7
(3)
A 		43
C 10.8
(-3)
A 		14.4
(-2.7)
A 		22.2
(-2.1)
A 		87.5
(3)
A 		77
avr 19.2
(-2) 		10.1
(-3) 		10.9
(-2.9) 		67.4
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 80.9
(3)
A 		15.2
(-2.4)
A 		25.9
(-1.5)
A 		44
(-0)
A 		30.8
(-1.1)
A 		7.8
(-3)
A 		73
B 36.9
(0.2)
A 		54.9
(2.1)
M 		6.8
(-3)
A 		7.8
(-2.9)
A 		63.7
(3)
A 		20.8
(-1.5)
A 		57
C 8.1
(-3)
A 		28.7
(-1)
A 		55.6
(1.6)
A 		69.8
(3)
A 		10.3
(-2.8)
A 		9.6
(-2.9)
A 		62
avr 42
(3) 		32.9
(1.1) 		29.4
(0.4) 		40.5
(2.7) 		34.9
(1.5) 		12.7
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.4
(3)
A 		1.2
(-3)
A 		1.5
(-2.8)
A 		9.8
(2.1)
A 		10
B 4.9
(-0.5)
A 		2.5
(-2.1)
A 		1.1
(-3)
A 		10.2
(3)
A 		9
C 3.6
(-3)
A 		4.1
(-2.7)
A 		7.7
(-0.8)
A 		14.7
(3)
A 		11
avr 6.6
(-0.3) 		2.6
(-3) 		3.4
(-2.5) 		11.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 14.9
(3)
A 		5.4
(-1.4)
A 		5.6
(-1.3)
A 		11.2
(1.3)
A 		9.3
(0.4)
A 		1.9
(-3)
A 		13
B 12.8
(-0.2)
A 		18.3
(1.1)
M 		1.6
(-3)
A 		2.1
(-2.9)
A 		25.9
(3)
A 		7.8
(-1.5)
A 		24
C 3
(-3)
A 		8.8
(0.1)
A 		14.2
(3)
A 		14
(2.9)
A 		3.3
(-2.8)
A 		3.2
(-2.9)
A 		11
avr 10.2
(1.2) 		10.8
(1.6) 		7.1
(-1) 		9.1
(0.4) 		12.8
(3) 		4.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18050
Sequence Type Exemplar sequence
Representative Public ID H18N23.1 NCBI
Target Description H18N23.1 /REP_DB=WormBase Gene ID /WP=CE23810 /TR=Q9N5M4 /GB=AAF39884.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078446(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078446 NCBI Caenorhabditis elegans H18N23.1 (H18N23.1) mRNA, complete cds. 9/11 A 
H18N23.1 ENSEMBL cdna:known chromosome:CEL140:X:17619887:17622249:1 gene:H18N23.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032029 1/11 Cross Hyb Matching Probes None
SNAP00000023897 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17619885-17622883(+) 31.53 100.0
Public Domain and Genome References
Gene Title
Ensembl H18N23.1
Entrez Gene 186751 Entrez gene
SwissProt Q9N5M4 EMBL-EBI
WormBase CE28736 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39884 Hypothetical protein H18N23.1 [Caenorhabditis elegans] ref|NP_510847.1| H18N23.1 [Caenorhabditis elegans] 1.0E-127
blast NP_501072 B0478.2 [Caenorhabditis elegans] 1.0E-75
blast T24544 hypothetical protein T05F1.12 - Caenorhabditis elegans 1.0E-75
Sequence
Target Sequence 
>C. ELEGANS:185847_AT
acaaccctagctccaaacgtatgataaaactacttgaaatgccgctgaaattccattcaa
gaaaagtgtatcaacgatgcaatgtctcatacacgtcatacgatgatcgactggctcagt
caaatcaaaaatccgttcaacaccagcgaattctccaaatattaaagacctaccacaaca
tcttatctggcgaataccactttccggatgtctcagcactaaagaagtcccgctctccac
ggtgtccatacatgatgcgtgcctcccgcacgttggtggggagtgggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACCCTAGCTCCAAACGTATGAT 110 113 269 Antisense
ACCCTAGCTCCAAACGTATGATAAA 478 89 272 Antisense
TATGATAAAACTACTTGAAATGCCG 227 651 288 Antisense
CGATGCAATGTCTCATACACGTCAT 589 249 343 Antisense
AATGTCTCATACACGTCATACGATG 526 163 349 Antisense
ATACACGTCATACGATGATCGACTG 661 23 357 Antisense
TCAGCACTAAAGAAGTCCCGCTCTC 197 625 481 Antisense
TCTCCACGGTGTCCATACATGATGC 565 609 502 Antisense
ACGGTGTCCATACATGATGCGTGCC 694 95 507 Antisense
TGCCTCCCGCACGTTGGTGGGGAGT 598 581 528 Antisense
CCGCACGTTGGTGGGGAGTGGGAAG 662 261 534 Antisense
Sequence Source Affymetrix Proprietary Database