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[185846_at]

Description W01A11.3 /REP_DB=WormBase Gene ID /WP=CE14394 /TR=Q23064 /GB=AAB04966.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 922.2
(3)
P 		539.5
(-0.7)
P 		382.2
(-2.2)
P 		294.1
(-3)
P 		628
B 858.6
(3)
P 		493.3
(-1.6)
P 		488.7
(-1.6)
P 		378.7
(-3)
P 		480
C 818
(3)
P 		487.1
(-0.6)
P 		549.8
(0.1)
P 		259.3
(-3)
P 		559
avr 866.3
(3) 		506.6
(-0.9) 		473.6
(-1.2) 		310.7
(-3) 		556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 869.6
(3)
P 		836.5
(2.6)
P 		505.6
(-1.3)
P 		442.5
(-2.1)
P 		490.6
(-1.5)
P 		362.2
(-3)
P 		507
B 924.3
(3)
P 		871.1
(2.4)
P 		527.2
(-1.4)
P 		533.9
(-1.4)
P 		388.6
(-3)
P 		446.1
(-2.4)
P 		536
C 871.6
(3)
P 		708.3
(0.9)
P 		556.1
(-1)
P 		394.4
(-3)
P 		442.1
(-2.4)
P 		408.7
(-2.8)
P 		477
avr 888.5
(3) 		805.3
(2) 		529.6
(-1.5) 		456.9
(-2.4) 		440.4
(-2.6) 		405.7
(-3) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 335.8
(3)
P 		117.1
(-1.5)
P 		99.9
(-1.8)
P 		43.1
(-3)
P 		293
B 273.8
(3)
P 		121.8
(-1.7)
P 		113.2
(-2)
P 		80.7
(-3)
P 		193
C 270.8
(3)
P 		140
(-0.5)
P 		191.6
(0.9)
P 		43.7
(-3)
P 		227
avr 293.5
(3) 		126.3
(-1.2) 		134.9
(-1) 		55.8
(-3) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 160.3
(-0.9)
P 		297.5
(3)
P 		110.1
(-2.4)
P 		112.2
(-2.3)
P 		148
(-1.3)
P 		88.2
(-3)
P 		209
B 321.6
(3)
P 		289.9
(2)
P 		128
(-3)
P 		141.4
(-2.6)
P 		157.9
(-2.1)
P 		166.4
(-1.8)
P 		194
C 323.1
(3)
P 		216.1
(0.4)
P 		141.5
(-1.5)
P 		79.3
(-3)
P 		143.1
(-1.4)
P 		136.8
(-1.6)
P 		244
avr 268.3
(3) 		267.8
(3) 		126.5
(-2.4) 		111
(-3) 		149.7
(-1.5) 		130.5
(-2.3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12410
Sequence Type Exemplar sequence
Representative Public ID W01A11.3 NCBI
Target Description W01A11.3 /REP_DB=WormBase Gene ID /WP=CE14394 /TR=Q23064 /GB=AAB04966.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072245 NCBI Caenorhabditis elegans UNCoordinated family member (unc-83) (unc-83) mRNA, complete cds. 11/11 A 
SNAP00000000911 ENSEMBL cdna:SNAP chromosome:CEL140:V:6488291:6489942:1 11/11 None
GENEFINDER00000000923 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6467807:6489942:1 11/11 None
W01A11.3 ENSEMBL cdna:known chromosome:CEL140:V:6467659:6490474:1 gene:W01A11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6482665-6489942(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-83
Ensembl W01A11.3
Entrez Gene 179033 Entrez gene
SwissProt Q23064 EMBL-EBI
WormBase CE31077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04966 Uncoordinated protein 83 [Caenorhabditis elegans] ref|NP_504646.2| UNCoordinated family member (unc-83) [Caenorhabditis elegans] gb|AAL15621.1| UNC-83 [Caenorhabditis elegans] sp|Q23064|UNC83_CAEEL Nuclear migration protein unc-83 (Uncoordinated protein 83) 0.0
blast T29644 hypothetical protein W01A11.3 - Caenorhabditis elegans 0.0
blast CAE71888 Hypothetical protein CBG18945 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504646.2 1 1005-1024
W01A11.3 1 1005-1024
SNAP00000000911 1 350-372
GENEFINDER00000000923 1 1005-1024
Sequence
Target Sequence 
>C. ELEGANS:185846_AT
gaaggatacgacgacgctgtcgacaaaattggaaaaatggctcactcattatcacaagtg
aaaggagaatgggatgcttggaatagcagacaaaatgatatcagaaatgcaatggttcgt
attgaatcccatctgaaagagggtcaaatggacaataaaatgattgcggatgagatggag
ttgtgtcaggaaagaatgaacagtctagaaactatgtgcaactacttgacagcctcgttg
ggatcaattcaaaatgaatccaactcaaagaatctgccagattttaaggcggaactctcg
atttacagcaatgcgttggccaggctgaaggatagattcaacgacatgatccgagtgcca
actcccccaacagtccaattccaccctccggagccacttccatctttggctcgaagcatg
acaactcaaacagctgaaatggaatcggaaactgaaaatgagccactcacaattgcggag
gcaatctcttcatctcgtctcatcaaattcacatttgccctttctcttctggcagcgctc
gcagcgattttctattatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGATACGACGACGCTGTCGACA 222 335 1864 Antisense
TGGTTCGTATTGAATCCCATCTGAA 515 551 1976 Antisense
ACTACTTGACAGCCTCGTTGGGATC 84 101 2084 Antisense
AAGGCGGAACTCTCGATTTACAGCA 608 159 2149 Antisense
AGCAATGCGTTGGCCAGGCTGAAGG 666 75 2170 Antisense
TCAACGACATGATCCGAGTGCCAAC 194 631 2201 Antisense
TTCCATCTTTGGCTCGAAGCATGAC 324 699 2261 Antisense
GAGCCACTCACAATTGCGGAGGCAA 189 385 2323 Antisense
CTTCATCTCGTCTCATCAAATTCAC 320 221 2351 Antisense
TCAAATTCACATTTGCCCTTTCTCT 286 629 2366 Antisense
GCGCTCGCAGCGATTTTCTATTATC 453 287 2398 Antisense
Sequence Source Affymetrix Proprietary Database