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[185844_at]

Description F31F4.17 /REP_DB=WormBase Gene ID /WP=CE09837 /TR=O17127 /GB=AAG24094.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 15.4
(-0.5)
A 		9
(-1.9)
A 		32
(3)
A 		3.7
(-3)
A 		28
B 5.7
(-1.7)
A 		8.8
(1.2)
A 		10.7
(3)
A 		4.3
(-3)
A 		6
C 1.1
(-3)
A 		13.3
(3)
A 		2.9
(-2.1)
A 		6.6
(-0.3)
A 		12
avr 7.4
(-1.5) 		10.4
(0.2) 		15.2
(3) 		4.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.3
(-1.2)
A 		3.3
(-2)
A 		9.3
(3)
A 		2.2
(-2.9)
A 		2.1
(-3)
A 		3.9
(-1.5)
A 		7
B 1
(-3)
A 		4.4
(-1.8)
A 		5.4
(-1.5)
A 		2
(-2.7)
A 		4.2
(-1.9)
A 		18.7
(3)
A 		18
C 2.3
(-3)
A 		14.6
(-0.3)
A 		5.5
(-2.3)
A 		9.1
(-1.5)
A 		29.3
(3)
A 		3.4
(-2.8)
A 		27
avr 2.5
(-3) 		7.4
(0.1) 		6.7
(-0.3) 		4.4
(-1.8) 		11.9
(3) 		8.7
(1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.6
(0.9)
A 		2
(-1.9)
A 		8.4
(3)
A 		0.5
(-3)
A 		8
B 1.8
(0.4)
A 		2.2
(1.9)
A 		2.5
(3)
A 		0.9
(-3)
A 		2
C 0.4
(-3)
A 		3.8
(3)
A 		1
(-1.9)
A 		1.1
(-1.8)
A 		3
avr 2.6
(0.4) 		2.7
(0.6) 		4
(3) 		0.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.1)
A 		1.2
(-0.4)
A 		2
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1
(-1.3)
A 		1
B 0.4
(-3)
A 		1.5
(-2)
A 		1.3
(-2.2)
A 		0.5
(-2.9)
A 		1.7
(-1.8)
A 		7
(3)
A 		7
C 0.8
(-3)
A 		4.5
(-0.4)
A 		1.4
(-2.6)
A 		1.8
(-2.3)
A 		9.5
(3)
A 		1.1
(-2.8)
A 		9
avr 0.7
(-3) 		2.4
(0.2) 		1.6
(-1.3) 		1
(-2.4) 		3.9
(3) 		3
(1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15794
Sequence Type Exemplar sequence
Representative Public ID F31F4.17 NCBI
Target Description F31F4.17 /REP_DB=WormBase Gene ID /WP=CE09837 /TR=O17127 /GB=AAG24094.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070882 NCBI Caenorhabditis elegans F31F4.17 (F31F4.17) mRNA, complete cds. 11/11 None
GENEFINDER00000012373 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:657684:660053:-1 11/11 None
F31F4.17 ENSEMBL cdna:known chromosome:CEL140:V:658306:660140:-1 gene:F31F4.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:658305-660140(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31F4.17
Entrez Gene 185174 Entrez gene
SwissProt O17127 EMBL-EBI
WormBase CE09837 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503283 F31F4.17 [Caenorhabditis elegans] gb|AAG24094.1| Hypothetical protein F31F4.17 [Caenorhabditis elegans] 0.0
blast NP_503601 Y5H2B.1 [Caenorhabditis elegans] gb|AAK84621.1| Hypothetical protein Y5H2B.1 [Caenorhabditis elegans] 1.0E-133
blast NP_503601 Y5H2B.1 [Caenorhabditis elegans] gb|AAK84621.1| Hypothetical protein Y5H2B.1 [Caenorhabditis elegans] 1.0E-129
blast CAE71087 Hypothetical protein CBG17937 [Caenorhabditis briggsae] 1.0E-109
blast CAE71087 Hypothetical protein CBG17937 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503283.1 2 5-27,40-59
F31F4.17 2 5-27,40-59
GENEFINDER00000012373 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:185844_AT
gccagttttctaaacaattcttctcaaaactttggaaatttgccaatttctactaacaaa
acacacataacttgtatacatactcggagaggcgatttccttggatatggctatcatgcc
actgattcaaaatttctgaaaaattcagaatttcaaaacaaagtttctaaaatttcagac
aaaaatagtaagaaaaatcgaaaaatagtgttatttggcgacgatttgaaatttctaaaa
aataagttcaatactgcgatagtttcgacagatggtcctgaagatggagaatattttatt
tctcaaaattcagcactggatgatctactctactcaaagtacaattgtgatacggttttg
ataacagctccccactctacatttggatggtggattgggtatttttcaaaaggagacact
gtttactatatggacataaaatattctcgagatcatatttatgatgctggaaaactcgtt
gaaaatgacttctacccaacccactggacgccgctgaagtttgcgagctctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGTTTTCTAAACAATTCTTCTC 342 279 610 Antisense
CATACTCGGAGAGGCGATTTCCTTG 682 213 688 Antisense
GAGGCGATTTCCTTGGATATGGCTA 159 407 698 Antisense
GATATGGCTATCATGCCACTGATTC 489 425 713 Antisense
GCGATAGTTTCGACAGATGGTCCTG 203 291 865 Antisense
AGCACTGGATGATCTACTCTACTCA 327 77 921 Antisense
TACGGTTTTGATAACAGCTCCCCAC 73 649 960 Antisense
AGGAGACACTGTTTACTATATGGAC 180 57 1020 Antisense
TTGAAAATGACTTCTACCCAACCCA 664 703 1088 Antisense
CCACTGGACGCCGCTGAAGTTTGCG 578 273 1110 Antisense
GCCGCTGAAGTTTGCGAGCTCTGAT 384 285 1119 Antisense
Sequence Source Affymetrix Proprietary Database