[Home] | [Total List]

[185843_s_at]

Description Y75B12B.8 /REP_DB=WormBase Gene ID /WP=CE17539 /TR=O62097 /GB=CAA21763.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7665
1 2 3 4 range
A 46.4
(-3)
A 		12
(-3)
A 		43.1
(-3)
A 		7472.6
(3)
P 		7461
B 8.9
(-3)
A 		13
(-3)
A 		7.5
(-3)
A 		7670.7
(3)
P 		7663
C 9.2
(-3)
A 		6.2
(-3)
A 		32.5
(-3)
A 		7179.9
(3)
P 		7174
avr 21.5
(-3) 		10.4
(-3) 		27.7
(-3) 		7441.1
(3) 		7431

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19172
1 2 3 4 5 6 range
A 13.4
(-3)
A 		31.3
(-3)
A 		31.4
(-3)
A 		388.9
(-2.9)
P 		7634.9
(-0.6)
P 		19185.6
(3)
P 		19172
B 39.1
(-3)
A 		20.2
(-3)
A 		44.2
(-3)
A 		261.9
(-2.9)
P 		7941.1
(0)
P 		15603.6
(3)
P 		15583
C 34.7
(-3)
A 		42.9
(-3)
A 		32.8
(-3)
A 		292.6
(-2.9)
P 		9387.1
(0.2)
P 		17541.4
(3)
P 		17509
avr 29.1
(-3) 		31.5
(-3) 		36.1
(-3) 		314.5
(-2.9) 		8321
(-0.1) 		17443.5
(3) 		17414
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1633
1 2 3 4 range
A 16.9
(-2.9)
A 		2.6
(-3)
A 		11.3
(-3)
A 		1093.8
(3)
P 		1091
B 2.8
(-3)
A 		3.2
(-3)
A 		1.7
(-3)
A 		1634.6
(3)
P 		1633
C 3
(-3)
A 		1.8
(-3)
A 		11.3
(-3)
A 		1210.6
(3)
P 		1209
avr 7.6
(-3) 		2.5
(-3) 		8.1
(-3) 		1313
(3) 		1311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5870
1 2 3 4 5 6 range
A 2.5
(-3)
A 		11.1
(-3)
A 		6.8
(-3)
A 		98.6
(-2.9)
P 		2303.9
(-0)
P 		4671.1
(3)
P 		4669
B 13.6
(-3)
A 		6.7
(-3)
A 		10.7
(-3)
A 		69.4
(-2.9)
P 		3226.4
(0.3)
P 		5818.5
(3)
P 		5812
C 12.9
(-3)
A 		13.1
(-3)
A 		8.4
(-3)
A 		58.8
(-2.9)
P 		3037.5
(0.1)
P 		5872.1
(3)
P 		5864
avr 9.7
(-3) 		10.3
(-3) 		8.6
(-3) 		75.6
(-2.9) 		2855.9
(0.1) 		5453.9
(3) 		5445
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185843_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14254
Sequence Type Exemplar sequence
Representative Public ID Y75B12B.8 NCBI
Target Description Y75B12B.8 /REP_DB=WormBase Gene ID /WP=CE17539 /TR=O62097 /GB=CAA21763.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074353(11), NM_074356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074353 NCBI Caenorhabditis elegans Y75B12B.8 (Y75B12B.8) mRNA, complete cds. 11/11 None
NM_074356 NCBI Caenorhabditis elegans C41G6.13 (C41G6.13) mRNA, complete cds. 11/11 None
SNAP00000010432 ENSEMBL cdna:SNAP chromosome:CEL140:V:15211008:15211918:1 11/11 None
GENEFINDER00000010447 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15211008:15211918:1 11/11 None
SNAP00000027064 ENSEMBL cdna:SNAP chromosome:CEL140:V:15204060:15204970:-1 11/11 None
GENEFINDER00000027066 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15204060:15204970:-1 11/11 None
Y75B12B.8 ENSEMBL cdna:known chromosome:CEL140:V:15204060:15204970:-1 gene:Y75B12B.8 11/11 None
C41G6.13 ENSEMBL cdna:known chromosome:CEL140:V:15211008:15211918:1 gene:C41G6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15211007-15211918(+) 100.0 100.0
chrV:15204059-15204970(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y75B12B.8
C41G6.13
Entrez Gene 180030 Entrez gene
180031 Entrez gene
SwissProt O62097 EMBL-EBI
WormBase CE17539 Wormbase
CE17539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02837 Hypothetical protein C41G6.13 [Caenorhabditis elegans] emb|CAA21763.1| Hypothetical protein Y75B12B.8 [Caenorhabditis elegans] ref|NP_506757.1| C41G6.13 [Caenorhabditis elegans] ref|NP_506754.1| Y75B12B.8 [Caenorhabditis elegans] 1.0E-126
blast CAE61761 Hypothetical protein CBG05720 [Caenorhabditis briggsae] 6.0E-18
Sequence
Target Sequence 
>C. ELEGANS:185843_S_AT
aaaaacttcatcgcacgtttgcaccgggcgcctttacattcacttatccaccatttaaca
gaaatacatttgctcctttgaaagaatcagtgaccaaaactcctgctgatgaagaggccg
ctcacttcacccatcgaccaccatatcgtcacgctacaaaaggaactaactcacatgtta
ctccaaaagacaatcgagaagtcatgttcacctggaaaatacttacttggaagccggaag
atttagcagcggtgtccaaaaagccacatacaaaagggaccaaggctccaccactgttcg
gagccgaagagcttgcccatcagggaaaacacacattcccgccaggcgccttcacttaca
agttcacaattccacctcttggcagaagaacatttgctccttttaaggaggtagtaaccc
aaaaaccacattcaaaaggcaccaaggcacctacacacgatgaaaaaagcagtcaggaca
agttgtacgatccgattacctggaagccaattcgcattactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAACTTCATCGCACGTTTGCACC 88 131 137 Antisense
ACATTCACTTATCCACCATTTAACA 180 105 172 Antisense
GAATCAGTGACCAAAACTCCTGCTG 579 327 220 Antisense
ACTCCTGCTGATGAAGAGGCCGCTC 348 99 235 Antisense
GGAACTAACTCACATGTTACTCCAA 606 529 298 Antisense
CTCCACCACTGTTCGGAGCCGAAGA 310 235 422 Antisense
GCGCCTTCACTTACAAGTTCACAAT 117 287 482 Antisense
TTCACAATTCCACCTCTTGGCAGAA 20 687 499 Antisense
CACCAAGGCACCTACACACGATGAA 489 201 576 Antisense
CAAGTTGTACGATCCGATTACCTGG 559 159 615 Antisense
ACCTGGAAGCCAATTCGCATTACTT 250 89 634 Antisense
Sequence Source Affymetrix Proprietary Database