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[185841_s_at]

Description F57B10.1 /REP_DB=WormBase Gene ID /WP=CE11300 /TR=O44743 /GB=AAB96719.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 10      6grp_total > 06      4grp_total > 05      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 1025.6
(0.6)
P 		802.5
(-3)
P 		810.8
(-2.9)
P 		1172.4
(3)
P 		370
B 983.1
(-0.9)
P 		825.4
(-3)
P 		941.6
(-1.5)
P 		1279.3
(3)
P 		454
C 1040.1
(-1.4)
P 		952.1
(-3)
P 		1012.6
(-1.9)
P 		1281
(3)
P 		329
avr 1016.3
(-0.6) 		860
(-3) 		921.7
(-2) 		1244.2
(3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1232
1 2 3 4 5 6 range
A 1532.8
(3)
P 		1292.8
(0.6)
P 		938.8
(-3)
P 		1069.8
(-1.7)
P 		1152.6
(-0.8)
P 		1111.2
(-1.3)
P 		594
B 1686.9
(3)
P 		1287
(-0.2)
P 		1256.7
(-0.4)
P 		1162
(-1.2)
P 		999.6
(-2.5)
P 		934.4
(-3)
P 		753
C 2161.7
(3)
P 		1327.9
(-1.1)
P 		1110.9
(-2.1)
P 		1164
(-1.9)
P 		1167.6
(-1.8)
P 		929.8
(-3)
P 		1232
avr 1793.8
(3) 		1302.6
(-0.7) 		1102.1
(-2.2) 		1131.9
(-2) 		1106.6
(-2.1) 		991.8
(-3) 		802
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 373.4
(3)
P 		174.2
(-2.9)
P 		212
(-1.8)
P 		171.6
(-3)
P 		202
B 313.5
(3)
P 		203.9
(-3)
P 		218.2
(-2.2)
P 		272.6
(0.8)
P 		110
C 344.3
(2.6)
P 		273.7
(-0.5)
P 		352.9
(3)
P 		216
(-3)
P 		137
avr 343.7
(3) 		217.3
(-3) 		261
(-0.9) 		220.1
(-2.9) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 597
1 2 3 4 5 6 range
A 282.6
(-1.2)
P 		459.8
(3)
P 		204.4
(-3)
P 		271.3
(-1.4)
P 		347.8
(0.4)
P 		270.6
(-1.4)
P 		255
B 587
(3)
P 		428.4
(-0.4)
P 		305.2
(-3)
P 		307.8
(-2.9)
P 		406.1
(-0.9)
P 		348.4
(-2.1)
P 		282
C 801.2
(3)
P 		405.2
(-1.2)
P 		282.8
(-2.5)
P 		234.1
(-3)
P 		377.8
(-1.5)
P 		311.3
(-2.2)
P 		567
avr 556.9
(3) 		431.1
(0.4) 		264.1
(-3) 		271.1
(-2.9) 		377.2
(-0.7) 		310.1
(-2.1) 		293
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185841_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1646
Sequence Type Exemplar sequence
Representative Public ID F57B10.1 NCBI
Target Description F57B10.1 /REP_DB=WormBase Gene ID /WP=CE11300 /TR=O44743 /GB=AAB96719.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059496 NCBI Caenorhabditis elegans F57B10.1 (F57B10.1) mRNA, complete cds. 11/11 None
SNAP00000025389 ENSEMBL cdna:SNAP chromosome:CEL140:I:6588736:6592594:1 11/11 None
GENEFINDER00000025393 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6589024:6592594:1 11/11 None
F57B10.1.1 ENSEMBL cdna:known chromosome:CEL140:I:6582138:6593307:1 gene:F57B10.1 11/11 None
F57B10.1.2 ENSEMBL cdna:known chromosome:CEL140:I:6588181:6593284:1 gene:F57B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6588300-6592523(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B10.1
Entrez Gene 266837 Entrez gene
SwissProt O44743 EMBL-EBI
WormBase CE37244 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96719 Hypothetical protein F57B10.1 [Caenorhabditis elegans] ref|NP_491897.2| F57B10.1 [Caenorhabditis elegans] 0.0
blast CAE67216 Hypothetical protein CBG12652 [Caenorhabditis briggsae] 0.0
blast CAE67216 Hypothetical protein CBG12652 [Caenorhabditis briggsae] 1.0E-178
blast CAE67216 Hypothetical protein CBG12652 [Caenorhabditis briggsae] 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-17
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-17
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 1.3E-17
Sequence
Target Sequence 
>C. ELEGANS:185841_S_AT
aaaggctcgtcgacatcatcatcgtcggcttcttcggttgcatcgtcgacatcgacatca
tctgcaacatctcccatctaccgtacctcgcgtactttgggtgcattcgaagatcaatgc
gatgcgtcgtcggatgattcgaactgtgcaaatatgccatcactggtgccaatgaagatg
tcagctcagccaccaaaaagaaagattgttacgatgaatggacagccaagagtcacttat
agagctgttccagcttcttctgtgaatgtagagcaggcacaatattacaaggtgccacaa
caaaaggtgcaatatgtaacgatggatagaccaattaaatatgaagtgttgaacgactat
atcaaaatggaagaagaatcaacaattcgtcttccaaactcctggtctactgctggtcca
cgccttcatccacaagttaatgcgtcttccagaactgttcgaccattgactgtggccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGCTCGTCGACATCATCATCGT 229 121 1546 Antisense
TTCGGTTGCATCGTCGACATCGACA 694 693 1578 Antisense
TACCTCGCGTACTTTGGGTGCATTC 267 647 1629 Antisense
TGCGATGCGTCGTCGGATGATTCGA 399 583 1663 Antisense
GCAAATATGCCATCACTGGTGCCAA 595 317 1693 Antisense
TGAAGATGTCAGCTCAGCCACCAAA 479 575 1718 Antisense
GAGTCACTTATAGAGCTGTTCCAGC 642 399 1775 Antisense
CTGTTCCAGCTTCTTCTGTGAATGT 547 239 1790 Antisense
ACAATTCGTCTTCCAAACTCCTGGT 379 115 1927 Antisense
AATGCGTCTTCCAGAACTGTTCGAC 268 167 1984 Antisense
CTGTTCGACCATTGACTGTGGCCAC 365 239 2000 Antisense
Sequence Source Affymetrix Proprietary Database