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[185839_at]

Description F56A11.3 /REP_DB=WormBase Gene ID /WP=CE17118 /TR=O44516 /GB=AAB92075.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 21      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 164.8
(0.6)
A 		134.5
(-0.8)
A 		84
(-3)
A 		219
(3)
A 		135
B 139.1
(1.8)
A 		152
(3)
A 		89.3
(-3)
A 		128.8
(0.8)
A 		63
C 247.1
(2.2)
A 		117.4
(-1.8)
A 		77
(-3)
A 		274.7
(3)
A 		198
avr 183.7
(1.8) 		134.6
(-0.5) 		83.4
(-3) 		207.5
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 228.4
(3)
A 		111.7
(-1.7)
A 		105.5
(-2)
A 		79.5
(-3)
A 		124
(-1.2)
A 		127.1
(-1.1)
A 		149
B 190.3
(3)
A 		117.6
(-1.2)
A 		121.2
(-1)
A 		86
(-3)
A 		93.2
(-2.6)
A 		130.2
(-0.5)
A 		104
C 197.9
(3)
A 		154.2
(0.9)
A 		75
(-3)
A 		82.2
(-2.6)
A 		139.9
(0.2)
A 		90.2
(-2.3)
A 		123
avr 205.5
(3) 		127.8
(-0.8) 		100.6
(-2.1) 		82.6
(-3) 		119
(-1.2) 		115.8
(-1.4) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 60
(3)
A 		29.2
(-1.9)
A 		22
(-3)
A 		32.1
(-1.4)
A 		38
B 44.4
(3)
A 		37.5
(1.3)
A 		20.7
(-3)
A 		27.4
(-1.3)
A 		24
C 81.8
(3)
A 		33.7
(-2.2)
A 		26.8
(-3)
A 		46.3
(-0.9)
A 		55
avr 62.1
(3) 		33.5
(-1.4) 		23.2
(-3) 		35.3
(-1.1) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 42.1
(3)
A 		39.7
(2.3)
A 		23
(-2.2)
A 		20.2
(-3)
A 		37.4
(1.7)
A 		30.9
(-0.1)
A 		22
B 66.2
(3)
A 		39.1
(-0.7)
A 		29.4
(-2.1)
A 		22.8
(-3)
A 		37.8
(-0.9)
A 		48.5
(0.6)
A 		43
C 73.4
(3)
A 		47.1
(0.2)
A 		19.1
(-2.7)
A 		16.5
(-3)
A 		45.3
(0)
A 		30.2
(-1.6)
A 		57
avr 60.6
(3) 		42
(0.3) 		23.8
(-2.4) 		19.8
(-3) 		40.2
(0) 		36.5
(-0.5) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11162
Sequence Type Exemplar sequence
Representative Public ID F56A11.3 NCBI
Target Description F56A11.3 /REP_DB=WormBase Gene ID /WP=CE17118 /TR=O44516 /GB=AAB92075.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067546
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007067 ENSEMBL cdna:SNAP chromosome:CEL140:IV:565445:571664:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067546 6/11 Cross Hyb Matching Probes A 
GENEFINDER00000007075 6/11 Cross Hyb Matching Probes None
F56A11.3 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:558930-568343(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92075 Eph(f)rin protein 4 [Caenorhabditis elegans] ref|NP_499947.1| Eph(F)riN family member (efn-4) [Caenorhabditis elegans] gb|AAL05561.1| ephrin EFN-4 [Caenorhabditis elegans] 1.0E-165
blast CAE58470 Hypothetical protein CBG01610 [Caenorhabditis briggsae] 1.0E-104
blast CAE65681 Hypothetical protein CBG10748 [Caenorhabditis briggsae] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001799 EMBL-EBI Ephrin 1.3E-60
Sequence
Target Sequence 
>C. ELEGANS:185839_AT
caccaactcgccgacaggaggattttgtgacaactgcgagcgccgaattgatgggcggac
aggaggatgaagattcagataacgacaatgcccatctgctgccgagggacttggaaggat
cgacgaatccaaagtttcgaagaccatcgcaattggagacggcaggagttgagaatcagc
aatttatgaaggttgtccaaatggctcaggctggcaaaactggcacatttgaaaacgaga
aagaggcgatcgcgcagaaaagttcggaaaaagacggatggcatccggtgaacgtgcaat
atgtggctgatctaatgaataatgcatatcagaatgctgatgagaggatttcttatcaaa
gggattttgaaattcacgaggagaatgatcttgctgtaaaatccttggaatattcatcat
cttcaacttcattatcaacaaattttgcaattttactagctaaaacttttcattcagcaa
aggcaaagtgggagaacatccccacgggcttcggtgccgatgcgtctgaagtcggcacca
atcagctatttcggcgccgatgcgaattaagctggtgccgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCAACTCGCCGACAGGAGGATTT 90 203 788 Antisense
TTTTGTGACAACTGCGAGCGCCGAA 160 679 810 Antisense
AGATAACGACAATGCCCATCTGCTG 223 67 864 Antisense
GGCTCAGGCTGGCAAAACTGGCACA 448 539 990 Antisense
GGATGGCATCCGGTGAACGTGCAAT 158 515 1063 Antisense
ATATTCATCATCTTCAACTTCATTA 540 19 1197 Antisense
AGTGGGAGAACATCCCCACGGGCTT 597 59 1274 Antisense
CTTCGGTGCCGATGCGTCTGAAGTC 261 209 1296 Antisense
TGAAGTCGGCACCAATCAGCTATTT 159 575 1314 Antisense
TCAGCTATTTCGGCGCCGATGCGAA 287 625 1329 Antisense
GATGCGAATTAAGCTGGTGCCGACG 413 413 1346 Antisense
Sequence Source Affymetrix Proprietary Database