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[185838_at]

Description C23G10.5 /REP_DB=WormBase Gene ID /WP=CE04051 /TR=Q9GYR8 /GB=AAF99869.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      6grp_total > 30      4grp_total > 45      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 112.9
(3)
P 		71.6
(0.4)
P 		18.9
(-3)
A 		52.7
(-0.8)
A 		94
B 101.6
(3)
P 		86.3
(2.1)
P 		56.4
(0.2)
A 		4.8
(-3)
A 		97
C 120.1
(3)
P 		74.2
(-0.1)
P 		54.6
(-1.5)
P 		32.3
(-3)
A 		88
avr 111.5
(3) 		77.4
(0.5) 		43.3
(-2) 		29.9
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 93.5
(-0.4)
P 		147.7
(2.2)
P 		148.9
(2.3)
P 		164.7
(3)
P 		37.5
(-3)
A 		48.9
(-2.5)
P 		127
B 84.2
(-1.1)
P 		157.7
(2.1)
P 		178.7
(3)
P 		102.4
(-0.3)
P 		87
(-0.9)
P 		39.3
(-3)
P 		139
C 94.7
(-0.7)
P 		151.2
(3)
P 		112.5
(0.5)
P 		93.4
(-0.8)
P 		58.9
(-3)
P 		65.8
(-2.6)
P 		92
avr 90.8
(-0.7) 		152.2
(3) 		146.7
(2.7) 		120.2
(1.1) 		61.1
(-2.4) 		51.3
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 41.1
(3)
P 		15.5
(-1.2)
P 		4.9
(-3)
A 		7.7
(-2.5)
A 		36
B 32.4
(3)
P 		21.3
(0.9)
P 		13.1
(-0.7)
A 		1
(-3)
A 		31
C 39.8
(3)
P 		21.3
(-0.2)
P 		19
(-0.6)
P 		5.4
(-3)
A 		34
avr 37.8
(3) 		19.4
(-0.3) 		12.3
(-1.6) 		4.7
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 17.2
(-2.1)
P 		52.5
(3)
P 		32.4
(0.1)
P 		41.8
(1.4)
P 		11.3
(-3)
A 		11.9
(-2.9)
P 		41
B 29.3
(-0.7)
P 		52.5
(3)
P 		43.4
(1.6)
P 		27.1
(-1)
P 		35.3
(0.3)
P 		14.7
(-3)
P 		38
C 35.1
(0.6)
P 		46.1
(3)
P 		28.6
(-0.8)
P 		18.8
(-3)
P 		19
(-3)
P 		22
(-2.3)
P 		27
avr 27.2
(-1.1) 		50.4
(3) 		34.8
(0.3) 		29.2
(-0.7) 		21.9
(-2) 		16.2
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6069
Sequence Type Exemplar sequence
Representative Public ID C23G10.5 NCBI
Target Description C23G10.5 /REP_DB=WormBase Gene ID /WP=CE04051 /TR=Q9GYR8 /GB=AAF99869.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065942 NCBI Caenorhabditis elegans C23G10.5 (C23G10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000025637 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6190517:6192021:1 11/11 None
SNAP00000025612 ENSEMBL cdna:SNAP chromosome:CEL140:III:6191119:6192021:1 11/11 None
C23G10.5 ENSEMBL cdna:known chromosome:CEL140:III:6191321:6192021:1 gene:C23G10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6191319-6192020(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23G10.5
Entrez Gene 182813 Entrez gene
SwissProt Q9GYR8 EMBL-EBI
WormBase CE04051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99869 Hypothetical protein C23G10.5 [Caenorhabditis elegans] ref|NP_498343.1| C23G10.5 [Caenorhabditis elegans] 1.0E-109
blast AAF99869 Hypothetical protein C23G10.5 [Caenorhabditis elegans] ref|NP_498343.1| C23G10.5 [Caenorhabditis elegans] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:185838_AT
gattcctactcattcgagtttcgagttctcgcaagattttcatctcgacgctgtgaggct
ccgttcttgttttggacgaaataacctattcaactttcattgtaaagaaattgaagttag
cgattcggaaatttcatcggaaaatgtaaatcaatatctacgtgcatgggctgctggctg
ctataatgaacttgaaaaactggaagttcttttctatggaaatgagaataaatttgattg
gaaaccattgctgcaaggtttaaaccgaaaacgtactatttatgaacacaatataattga
cccagaagtgaccgatgaaaccacggaagtgaaaattgaaactgaacatcctggagagtt
tgattactactattacaaatgggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCTACTCATTCGAGTTTCGAG 614 433 222 Antisense
CGAGTTCTCGCAAGATTTTCATCTC 244 249 243 Antisense
TTTTCATCTCGACGCTGTGAGGCTC 662 675 258 Antisense
GCTCCGTTCTTGTTTTGGACGAAAT 682 297 279 Antisense
AATAACCTATTCAACTTTCATTGTA 35 173 301 Antisense
ATCAATATCTACGTGCATGGGCTGC 181 27 371 Antisense
TGGGCTGCTGGCTGCTATAATGAAC 113 555 388 Antisense
TGATTGGAAACCATTGCTGCAAGGT 62 565 456 Antisense
GACCCAGAAGTGACCGATGAAACCA 474 381 520 Antisense
AATTGAAACTGAACATCCTGGAGAG 353 179 555 Antisense
GATTACTACTATTACAAATGGGCCA 368 429 583 Antisense
Sequence Source Affymetrix Proprietary Database