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[185837_at]

Description F21C10.4 /REP_DB=WormBase Gene ID /WP=CE07119 /TR=Q19666 /GB=AAA97976.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      4grp_high_8_8 > 13      6grp_total > 85      4grp_total > 02      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 48.8
(-3)
A 		82.1
(-1.6)
P 		69
(-2.1)
M 		189.4
(3)
P 		141
B 75.4
(-1.9)
P 		38.7
(-3)
A 		49.3
(-2.7)
A 		233
(3)
P 		194
C 53.4
(-3)
A 		69.7
(-2.5)
A 		62
(-2.7)
P 		257.2
(3)
P 		204
avr 59.2
(-3) 		63.5
(-2.8) 		60.1
(-3) 		226.5
(3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 55.2
(-3)
A 		93
(-1.7)
P 		129.8
(-0.4)
P 		188.7
(1.6)
P 		210.6
(2.4)
P 		228.6
(3)
P 		173
B 76.8
(-3)
P 		80.9
(-2.8)
A 		115.3
(-0.7)
P 		140
(0.8)
P 		177
(3)
P 		172.9
(2.8)
P 		100
C 85.7
(-3)
P 		148.4
(0.3)
P 		141.7
(-0)
P 		162.3
(1.1)
P 		173.2
(1.7)
P 		198.4
(3)
P 		113
avr 72.6
(-3) 		107.4
(-1.4) 		128.9
(-0.3) 		163.7
(1.3) 		186.9
(2.4) 		200
(3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 17.8
(-3)
A 		17.8
(-3)
P 		18
(-2.9)
M 		27.7
(3)
P 		10
B 24
(-0.8)
P 		9.5
(-3)
A 		11.4
(-2.7)
A 		49.7
(3)
P 		40
C 17.7
(-3)
A 		20
(-2.5)
A 		21.6
(-2.1)
P 		43.4
(3)
P 		26
avr 19.8
(-2) 		15.8
(-3) 		17
(-2.7) 		40.3
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 10.2
(-3)
A 		33.1
(-0.4)
P 		28.3
(-1)
P 		47.9
(1.2)
P 		63.6
(3)
P 		55.7
(2.1)
P 		53
B 26.7
(-3)
P 		26.9
(-3)
A 		28
(-2.8)
P 		37.1
(-1.6)
P 		71.9
(3)
P 		64.5
(2)
P 		45
C 31.7
(-3)
P 		45.3
(-0.6)
P 		36.1
(-2.2)
P 		32.6
(-2.8)
P 		56
(1.2)
P 		66.4
(3)
P 		35
avr 22.9
(-3) 		35.1
(-1.2) 		30.8
(-1.8) 		39.2
(-0.6) 		63.8
(3) 		62.2
(2.8) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185837_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12278
Sequence Type Exemplar sequence
Representative Public ID F21C10.4 NCBI
Target Description F21C10.4 /REP_DB=WormBase Gene ID /WP=CE07119 /TR=Q19666 /GB=AAA97976.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072965(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072965 NCBI Caenorhabditis elegans F21C10.4 (F21C10.4) mRNA, complete cds. 11/11 None
F21C10.4 ENSEMBL cdna:known chromosome:CEL140:V:9129265:9130179:1 gene:F21C10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042381 6/11 Cross Hyb Matching Probes None
GENEFINDER00000042386 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9129265-9130180(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C10.4
Entrez Gene 184764 Entrez gene
SwissProt Q19666 EMBL-EBI
WormBase CE07119 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97976 Hypothetical protein F21C10.4 [Caenorhabditis elegans] ref|NP_505366.1| F21C10.4 [Caenorhabditis elegans] 3.0E-80
blast CAE72107 Hypothetical protein CBG19199 [Caenorhabditis briggsae] 4.0E-48
blast CAE72108 Hypothetical protein CBG19200 [Caenorhabditis briggsae] 5.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.5E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505366.1 1 172-194
F21C10.4 1 172-194
Sequence
Target Sequence 
>C. ELEGANS:185837_AT
atcgttctgttttctttactggcattctatgaaataagtgcaaaaagtggcggtggtgga
ggacgaggtggaggaggccgcggtagtagtggggccagaagttccagtaggtcattttca
agatctggtggagcagggggcggaaagtttcattcaagctctagccgctcatcatattta
aactatgactccagtgcctttcggtctaatgttttcaagccaacaacttcaaattcatac
ttcgcgacaggtacaagtggaagcacacatgtgatcattcaaccagctaccccaataata
tatgacaatcatcactattattggcatggatactatcgtagtcatcccgagaagccaaca
atttgtgagtactcaatcagtgatgaagatggagaactcttcaatgtcacttttgcaaat
agtacgaaaccgaaatccataacttttggatgtggaagttctgaaagatgttgcggaatg
gaatgttgtaataacattggcgactggctcggagtagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTTCTGTTTTCTTTACTGGCAT 592 35 31 Antisense
GGGGCCAGAAGTTCCAGTAGGTCAT 595 497 121 Antisense
AAAGTTTCATTCAAGCTCTAGCCGC 170 123 174 Antisense
GCTCTAGCCGCTCATCATATTTAAA 549 299 188 Antisense
TAAACTATGACTCCAGTGCCTTTCG 130 641 209 Antisense
AGTGCCTTTCGGTCTAATGTTTTCA 304 61 223 Antisense
ACTTCAAATTCATACTTCGCGACAG 232 103 256 Antisense
CATGTGATCATTCAACCAGCTACCC 64 211 298 Antisense
GTAGTCATCCCGAGAAGCCAACAAT 234 457 368 Antisense
GAGAACTCTTCAATGTCACTTTTGC 104 393 422 Antisense
CATTGGCGACTGGCTCGGAGTAGCA 560 217 525 Antisense
Sequence Source Affymetrix Proprietary Database