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[185836_s_at]

Description F10E7.11 /REP_DB=WormBase Gene ID /WP=CE04366 /TR=Q19306 /GB=AAA82428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 84      6grp_total > 79      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 814.1
(3)
P 		408.5
(-3)
P 		555.3
(-0.8)
P 		553.8
(-0.9)
P 		406
B 746.7
(3)
P 		534.4
(-1.4)
P 		459.4
(-3)
P 		506.1
(-2)
P 		287
C 820
(3)
P 		405.2
(-3)
P 		487.4
(-1.8)
P 		417.6
(-2.8)
P 		415
avr 793.6
(3) 		449.4
(-3) 		500.7
(-2.1) 		492.5
(-2.2) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 469
1 2 3 4 5 6 range
A 672.8
(0.3)
P 		639.1
(-0.1)
P 		416.6
(-3)
P 		439.2
(-2.7)
P 		878
(3)
P 		788.7
(1.8)
P 		461
B 604
(0.5)
P 		683.5
(2)
P 		409.3
(-3)
P 		532.9
(-0.7)
P 		702.5
(2.3)
P 		738.4
(3)
P 		329
C 686
(-1.3)
P 		729.4
(0)
P 		639.5
(-2.6)
P 		627.5
(-3)
P 		741.6
(0.4)
P 		829.5
(3)
P 		202
avr 654.3
(0.3) 		684
(0.9) 		488.5
(-3) 		533.2
(-2.1) 		774
(2.8) 		785.5
(3) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 296.4
(3)
P 		88.7
(-2.8)
P 		145.2
(-1.2)
P 		81.1
(-3)
P 		215
B 238.1
(3)
P 		132
(-1.8)
P 		106.5
(-3)
P 		107.9
(-2.9)
P 		132
C 271.5
(3)
P 		116.5
(-1.6)
P 		169.9
(-0)
P 		70.4
(-3)
P 		201
avr 268.7
(3) 		112.4
(-2.1) 		140.5
(-1.2) 		86.5
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 124
(-1.9)
P 		227.3
(1.7)
P 		90.7
(-3)
P 		111.4
(-2.3)
P 		264.9
(3)
P 		192
(0.5)
P 		174
B 210.2
(0.6)
P 		227.5
(1.1)
P 		99.4
(-3)
P 		141.2
(-1.7)
P 		285.4
(3)
P 		275.3
(2.7)
P 		186
C 254.3
(2.1)
P 		222.6
(0.8)
P 		162.8
(-1.6)
P 		126.2
(-3)
P 		240
(1.5)
P 		277.7
(3)
P 		152
avr 196.2
(0.2) 		225.8
(1.5) 		117.6
(-3) 		126.3
(-2.6) 		263.4
(3) 		248.3
(2.4) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185836_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5763
Sequence Type Exemplar sequence
Representative Public ID F10E7.11 NCBI
Target Description F10E7.11 /REP_DB=WormBase Gene ID /WP=CE04366 /TR=Q19306 /GB=AAA82428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063073(11), NM_063077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063073 NCBI Caenorhabditis elegans F10E7.11 (F10E7.11) mRNA, complete cds. 11/11 None
NM_063077 NCBI Caenorhabditis elegans T07F8.4 (T07F8.4) mRNA, complete cds. 11/11 None
SNAP00000000732 ENSEMBL cdna:SNAP chromosome:CEL140:II:7120619:7121478:-1 11/11 None
GENEFINDER00000000743 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7120619:7121947:-1 11/11 None
SNAP00000013177 ENSEMBL cdna:SNAP chromosome:CEL140:II:7130627:7131946:-1 11/11 None
GENEFINDER00000013181 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7130627:7131946:-1 11/11 None
F10E7.11 ENSEMBL cdna:known chromosome:CEL140:II:7120519:7121712:-1 gene:F10E7.11 11/11 None
T07F8.4 ENSEMBL cdna:known chromosome:CEL140:II:7130523:7131964:-1 gene:T07F8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7120614-7121976(-) 99.78 100.0
chrII:7130622-7131551(-) 86.93 86.93
Public Domain and Genome References
Gene Title

Ensembl F10E7.11
T07F8.4
Entrez Gene 174170 Entrez gene
174173 Entrez gene
SwissProt Q19306 EMBL-EBI
P91437 EMBL-EBI
WormBase CE32367 Wormbase
CE13385 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28355.1.S1_AT similar to mesoderm induction early response 1 cfa
DROSOPHILA_2:1626883_AT dm
DROSGENOME1:146745_AT dm
CHICKEN:GGA.19168.1.S1_AT mesoderm induction early response 1 homolog (Xenopus laevis) gga
CHICKEN:GGA.19420.1.S1_S_AT mesoderm induction early response 1 homolog (Xenopus laevis) gga
CHICKEN:GGAAFFX.12098.1.S1_S_AT mesoderm induction early response 1 homolog (Xenopus laevis) gga
HG-U133B:225475_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U133_PLUS_2:225475_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HU35KSUBC:RC_N72892_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HU35KSUBC:RC_AA411556_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HU35KSUBD:RC_R78536_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
U133_X3P:HS2.222746.4.S1_3P_S_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
U133_X3P:HS.42411.0.S1_3P_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
U133_X3P:HS.222746.0.A1_3P_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U133_PLUS_2:1555105_A_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U133_PLUS_2:240227_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U133B:240227_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U95C:53105_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U95C:58411_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U95C:63749_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U95D:91292_AT mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U133_PLUS_2:240980_AT Mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U133B:240980_AT Mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U95B:44240_AT Mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U95C:63497_AT Mesoderm induction early response 1 homolog (Xenopus laevis) hs
HG-U95E:75834_AT Mesoderm induction early response 1 homolog (Xenopus laevis) hs
HU35KSUBA:AA279633_AT Mesoderm induction early response 1 homolog (Xenopus laevis) hs
HU35KSUBB:RC_R15946_AT Mesoderm induction early response 1 homolog (Xenopus laevis) hs
MOUSE430_2:1453760_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MOE430B:1453760_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MG-U74BV2:114716_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MG-U74BV2:115655_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MOE430B:1433755_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MOUSE430_2:1433755_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MOE430B:1443879_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MOUSE430_2:1443879_AT mesoderm induction early response 1 homolog (Xenopus laevis mm
MOUSE430_2:1443400_AT Mesoderm induction early response 1 homolog (Xenopus laevis (Mier1), mRNA mm
MOE430B:1443400_AT Mesoderm induction early response 1 homolog (Xenopus laevis (Mier1), mRNA mm
MU19KSUBC:TC39259_AT Mesoderm induction early response 1 homolog (Xenopus laevis (Mier1), mRNA mm
RAE230B:1395710_AT similar to mesoderm induction early response 1 (MI-ER1) rn
RAT230_2:1395710_AT similar to mesoderm induction early response 1 (MI-ER1) rn
RAE230A:1399025_AT Similar to hypothetical protein MGC38950 (predicted) rn
RAT230_2:1399025_AT Similar to hypothetical protein MGC38950 (predicted) rn
RG-U34C:RC_AI178052_AT Similar to hypothetical protein MGC38950 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB38099 Hypothetical protein T07F8.4 [Caenorhabditis elegans] ref|NP_495478.1| T07F8.4 [Caenorhabditis elegans] 1.0E-164
blast AAB38099 Hypothetical protein T07F8.4 [Caenorhabditis elegans] ref|NP_495478.1| T07F8.4 [Caenorhabditis elegans] 1.0E-133
blast AAA82428 Hypothetical protein F10E7.11 [Caenorhabditis elegans] ref|NP_495474.2| F10E7.11 [Caenorhabditis elegans] 1.0E-122
blast AAB38099 Hypothetical protein T07F8.4 [Caenorhabditis elegans] ref|NP_495478.1| T07F8.4 [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 8.2E-4
Pfam IPR000949 EMBL-EBI ELM2 domain 4.5E-18
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 8.2E-4
Pfam IPR000949 EMBL-EBI ELM2 domain 4.5E-18
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 8.2E-4
Pfam IPR000949 EMBL-EBI ELM2 domain 4.5E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000743 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:185836_S_AT
cagctggcaccgaatcacgagacgacgaggacgctctatgtgctttgtatagaagcaact
ttgacacagaaaaggcgaaagaatcattcccttttcctcatataaatgccccattccgca
ctgttcgctcagatgcattgggattcgatgagagtgaagcaaaggcatttgaagagtcac
tcgagctgtatggaaaagatttttcgctgataaggagactacggctaccctaccggaaag
ttggagaacttatcgaatactactatcaatggaaattaacccctggctatcgagtttggc
gggacgctcatccacagcatgcgccagtagttcagcctcatttatctgctgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTGGCACCGAATCACGAGACGA 630 203 452 Antisense
ACGAGGACGCTCTATGTGCTTTGTA 573 93 476 Antisense
GCGAAAGAATCATTCCCTTTTCCTC 314 287 526 Antisense
TCCTCATATAAATGCCCCATTCCGC 467 591 546 Antisense
CGCACTGTTCGCTCAGATGCATTGG 34 255 568 Antisense
GAAGAGTCACTCGAGCTGTATGGAA 326 339 622 Antisense
TAAGGAGACTACGGCTACCCTACCG 700 633 662 Antisense
GGAAATTAACCCCTGGCTATCGAGT 599 525 722 Antisense
TGGCTATCGAGTTTGGCGGGACGCT 548 503 735 Antisense
CCACAGCATGCGCCAGTAGTTCAGC 628 273 763 Antisense
GTTCAGCCTCATTTATCTGCTGCAT 116 445 781 Antisense
Sequence Source Affymetrix Proprietary Database