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[185833_at]

Description T05B11.2 /REP_DB=WormBase Gene ID /WP=CE07465 /TR=Q22211 /GB=AAB37067.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 21      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 23.1
(0.7)
A 		32.4
(3)
A 		8.6
(-3)
A 		17.4
(-0.8)
A 		24
B 41.6
(3)
A 		12.4
(-1.7)
A 		4.5
(-3)
A 		12.4
(-1.7)
A 		37
C 9.2
(-2.5)
A 		15.3
(-2)
A 		4.1
(-3)
A 		68.2
(3)
A 		64
avr 24.6
(1.2) 		20
(0.2) 		5.7
(-3) 		32.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 40.9
(3)
A 		5.2
(-2.9)
A 		13.7
(-1.5)
A 		8.4
(-2.4)
A 		12.3
(-1.7)
A 		4.7
(-3)
A 		36
B 8.7
(2.9)
A 		4.8
(-1.6)
A 		3.6
(-3)
A 		3.8
(-2.8)
A 		8.8
(3)
A 		5.7
(-0.6)
A 		5
C 6.6
(-2.8)
A 		9.8
(-1.9)
A 		28.4
(3)
A 		5.8
(-3)
A 		9.2
(-2.1)
A 		6.1
(-2.9)
A 		23
avr 18.7
(3) 		6.6
(-2.5) 		15.2
(1.4) 		6
(-2.8) 		10.1
(-0.9) 		5.5
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.4
(3)
A 		7
(1.6)
A 		2.2
(-3)
A 		2.5
(-2.7)
A 		6
B 13.3
(3)
A 		3.1
(-2)
A 		1
(-3)
A 		2.6
(-2.2)
A 		12
C 3.1
(-2)
A 		4.4
(-1.2)
A 		1.4
(-3)
A 		11.5
(3)
A 		10
avr 8.3
(3) 		4.8
(-0.1) 		1.5
(-3) 		5.5
(0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.5
(3)
A 		1.9
(-2.3)
A 		3
(-1.3)
A 		2.1
(-2.1)
A 		3.7
(-0.6)
A 		1.2
(-3)
A 		6
B 3
(1.7)
A 		1.6
(-1.4)
A 		0.9
(-3)
A 		1
(-2.8)
A 		3.6
(3)
A 		2.1
(-0.3)
A 		3
C 2.5
(-1.7)
A 		3
(-1.2)
A 		7.2
(3)
A 		1.2
(-3)
A 		3
(-1.2)
A 		2
(-2.2)
A 		6
avr 4.3
(3) 		2.2
(-1.3) 		3.7
(1.8) 		1.4
(-3) 		3.4
(1.1) 		1.8
(-2.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11382
Sequence Type Exemplar sequence
Representative Public ID T05B11.2 NCBI
Target Description T05B11.2 /REP_DB=WormBase Gene ID /WP=CE07465 /TR=Q22211 /GB=AAB37067.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072599(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072599 NCBI Caenorhabditis elegans Serpentine Receptor, class R family member (srr-9) (srr-9) mRNA, complete cds. 9/11 None
GENEFINDER00000037448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7738211:7750490:1 10/11 None
T05B11.2 ENSEMBL cdna:known chromosome:CEL140:V:7740602:7742188:1 gene:T05B11.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037442 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7738370-7742567(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srr-9
Ensembl T05B11.2
Entrez Gene 188110 Entrez gene
SwissProt Q22211 EMBL-EBI
WormBase CE30447 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505000 Serpentine Receptor, class R family member (srr-9) [Caenorhabditis elegans] gb|AAB37067.2| Serpentine receptor, class r protein 9 [Caenorhabditis elegans] 0.0
blast NP_741566 Serpentine Receptor, class R family member (srr-10) [Caenorhabditis elegans] gb|AAN73859.1| Serpentine receptor, class r protein 10 [Caenorhabditis elegans] 0.0
blast AAB65303 Serpentine receptor, class r protein 8 [Caenorhabditis elegans] ref|NP_504344.1| Serpentine Receptor, class R family member (srr-8) [Caenorhabditis elegans] 1.0E-165
blast AAB65303 Serpentine receptor, class r protein 8 [Caenorhabditis elegans] ref|NP_504344.1| Serpentine Receptor, class R family member (srr-8) [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505000.2 7 42-64,79-101,131-153,173-195,240-262,277-299,346-368
T05B11.2 7 42-64,79-101,131-153,173-195,240-262,277-299,346-368
GENEFINDER00000037448 13 39-61,78-97,128-150,171-193,247-269,274-296,357-379,428-450,465-487,517-539,559-581,626-648,663-685
Sequence
Target Sequence 
>C. ELEGANS:185833_AT
tcgagatgacattatttgccaacggatcactgtcaagcctcggaggatttgccccattat
tcttgctctggggcctggtcaacggaatttatctaacctcattcttcaacaccacacctg
ttctgtactgcattattcttggatttaacatggctgccattattttctacagtgtttttg
tttcgatcccaccttgcactctacaagaacatctgaaatctaccaaccgcattttgatca
atcatgatgaatttgaatgcacaaaagatccaattgtatatcaaacttatcggataatga
ttgatcgcctacagaaaattgatactaacatttgtattatttcttggattccaattacac
aaagcacaattcagatattttcaaaaattttcaaaccatattgtcattacaatcgaaatt
tttttaaacttttcctaaaatcaatagttttcggaaaaattggagcttcaaagatggaat
gttttgaacttgttttgaacatgtatttttttaaaaatgcatcaaaagttctttttcaaa
acctacgaaatgtatccctttctccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGATGACATTATTTGCCAACGG 337 601 1766 Antisense
TTTGCCAACGGATCACTGTCAAGCC 264 667 1780 Antisense
GTCAAGCCTCGGAGGATTTGCCCCA 303 463 1797 Antisense
TTTGCCCCATTATTCTTGCTCTGGG 259 667 1813 Antisense
TGGGGCCTGGTCAACGGAATTTATC 488 551 1834 Antisense
TTTATCTAACCTCATTCTTCAACAC 82 675 1853 Antisense
CACCTGTTCTGTACTGCATTATTCT 323 201 1880 Antisense
TACAGTGTTTTTGTTTCGATCCCAC 166 641 1933 Antisense
TCCCACCTTGCACTCTACAAGAACA 698 597 1952 Antisense
TGGATTCCAATTACACAAAGCACAA 413 551 2110 Antisense
TACGAAATGTATCCCTTTCTCCGAT 287 649 2309 Antisense
Sequence Source Affymetrix Proprietary Database