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[185831_at]

Description Y39D8B.3 /REP_DB=WormBase Gene ID /WP=CE24239 /TR=Q9N511 /GB=AAF60533.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.3
(-3)
A 		3.8
(-0.4)
A 		5.8
(3)
A 		3
(-1.8)
A 		4
B 13.4
(3)
A 		3.2
(-2.6)
A 		2.4
(-3)
A 		8.7
(0.4)
A 		11
C 4.3
(-3)
A 		9.6
(-1.6)
A 		17.5
(0.4)
A 		27.4
(3)
A 		23
avr 6.7
(-2) 		5.5
(-3) 		8.6
(-0.5) 		13
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.1
(-2.5)
A 		16.1
(1.5)
A 		5.1
(-1.9)
A 		21.1
(3)
A 		1.5
(-3)
A 		4
(-2.2)
A 		20
B 13.4
(-0.4)
A 		2.8
(-2.6)
A 		30.2
(3)
A 		2.9
(-2.6)
A 		15.1
(-0.1)
A 		0.7
(-3)
A 		30
C 20.1
(3)
A 		1.4
(-3)
A 		15.2
(1.4)
A 		4.3
(-2.1)
A 		13.4
(0.9)
A 		4
(-2.2)
A 		19
avr 12.2
(1) 		6.8
(-1.3) 		16.8
(3) 		9.4
(-0.2) 		10
(0.1) 		2.9
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.8
(-0.8)
A 		0.8
(-0.8)
A 		1.5
(3)
A 		0.4
(-3)
A 		1
B 4.3
(3)
A 		0.8
(-2.7)
A 		0.6
(-3)
A 		1.9
(-0.9)
A 		4
C 1.4
(-3)
A 		2.8
(-1.2)
A 		6.1
(3)
A 		4.6
(1.1)
A 		5
avr 2.2
(0.5) 		1.5
(-3) 		2.7
(3) 		2.3
(1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		5.7
(3)
A 		1.1
(-2.3)
A 		5.4
(2.7)
A 		0.5
(-3)
A 		1
(-2.4)
A 		5
B 4.7
(0.8)
A 		0.9
(-2.5)
A 		7.3
(3)
A 		0.8
(-2.6)
A 		6.1
(2)
A 		0.3
(-3)
A 		7
C 7.4
(3)
A 		0.4
(-3)
A 		3.9
(0)
A 		0.9
(-2.6)
A 		4.3
(0.3)
A 		1.3
(-2.2)
A 		7
avr 4.2
(3) 		2.3
(-0.5) 		4.1
(2.8) 		2.4
(-0.3) 		3.6
(1.9) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15042
Sequence Type Exemplar sequence
Representative Public ID Y39D8B.3 NCBI
Target Description Y39D8B.3 /REP_DB=WormBase Gene ID /WP=CE24239 /TR=Q9N511 /GB=AAF60533.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070781
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070781 NCBI Caenorhabditis elegans Y39D8B.3 (Y39D8B.3) mRNA, complete cds. None
Y39D8B.3 ENSEMBL cdna:known chromosome:CEL140:V:375064:379501:-1 gene:Y39D8B.3 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018381 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:375063-379501(-) 90.77 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39D8B.3
Entrez Gene 189752 Entrez gene
SwissProt Q9N511 EMBL-EBI
WormBase CE36234 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60533 Hypothetical protein Y39D8B.3 [Caenorhabditis elegans] ref|NP_503182.2| Y39D8B.3 [Caenorhabditis elegans] 0.0
blast CAE58270 Hypothetical protein CBG01376 [Caenorhabditis briggsae] 0.0
blast CAE58271 Hypothetical protein CBG01377 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185831_AT
gttctggaagcttcaggtgtcacggaaactgttgccaatttgagaaaagctgaaaaagaa
gaagaggaaaaggaaagaatgcgagattttgtggacaaagatgggaaaccaatgtacttc
tcaaaggagaatgcaacgcagatatatggggagtatgaggcgggaaaactagaattgctc
gacggattttataagtcactgtcgtcagggcagcgtactccaaaagtgtggaagtttttg
ggatatcatagaaattccagacctttccagaatttttccaatttttctaaaatttttggt
atttctagaaaatatcaaagatgccacaaacttttcagaagtttccaaaagtttgaattt
cccaccaaaaaatttttccctaccaatttcaaaatttttcagatggaatccatgaacaag
actggatataccgttatgaatgacaagcagctcgaaactatatacggacacggttcacca
ttcaacaactcggaagctcttcagaaattccgcggaatttcgccggaaagtatgccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTGGAAGCTTCAGGTGTCACGG 309 441 1240 Antisense
GGTGTCACGGAAACTGTTGCCAATT 129 499 1255 Antisense
GATGGGAAACCAATGTACTTCTCAA 705 407 1339 Antisense
AACTAGAATTGCTCGACGGATTTTA 107 1 1406 Antisense
ATAAGTCACTGTCGTCAGGGCAGCG 706 25 1430 Antisense
CAGGGCAGCGTACTCCAAAAGTGTG 157 209 1445 Antisense
AAGATGCCACAAACTTTTCAGAAGT 27 155 1557 Antisense
GCAGCTCGAAACTATATACGGACAC 478 313 1686 Antisense
TACGGACACGGTTCACCATTCAACA 629 647 1702 Antisense
GAAGCTCTTCAGAAATTCCGCGGAA 185 343 1732 Antisense
GAATTTCGCCGGAAAGTATGCCAGC 287 325 1754 Antisense
Sequence Source Affymetrix Proprietary Database