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[185829_at]

Description ZK1055.2 /REP_DB=WormBase Gene ID /WP=CE18471 /TR=O76446 /GB=AAC19260.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 38.3
(3)
A 		29.7
(-2)
A 		28
(-3)
A 		37.3
(2.4)
A 		10
B 44.4
(3)
M 		8.8
(-2.2)
A 		3.7
(-3)
A 		40.2
(2.4)
P 		41
C 43.8
(3)
A 		24.4
(-0.9)
A 		14.2
(-3)
A 		38.3
(1.9)
A 		30
avr 42.2
(3) 		21
(-1.7) 		15.3
(-3) 		38.6
(2.2) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 43.7
(-0.8)
A 		13
(-3)
A 		95.2
(3)
P 		33.6
(-1.5)
A 		87.2
(2.4)
P 		36.5
(-1.3)
A 		82
B 46.2
(-1.3)
A 		37.7
(-2.6)
A 		37.7
(-2.6)
A 		34.7
(-3)
P 		76.5
(3)
P 		40.4
(-2.2)
P 		42
C 42.7
(0.8)
A 		52.3
(3)
P 		26.2
(-3)
A 		37.4
(-0.4)
A 		40.9
(0.4)
M 		42.3
(0.7)
A 		26
avr 44.2
(-1.2) 		34.3
(-3) 		53
(0.3) 		35.2
(-2.8) 		68.2
(3) 		39.7
(-2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14
(3)
A 		6.4
(-2.4)
A 		7.3
(-1.7)
A 		5.5
(-3)
A 		9
B 14.1
(3)
M 		2.2
(-2.4)
A 		0.9
(-3)
A 		8.6
(0.5)
P 		13
C 14.5
(3)
A 		7
(-1.7)
A 		4.9
(-3)
A 		6.5
(-2)
A 		10
avr 14.2
(3) 		5.2
(-2.5) 		4.4
(-3) 		6.9
(-1.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.1
(-2)
A 		4.6
(-3)
A 		20.7
(1.5)
P 		8.5
(-1.9)
A 		26.3
(3)
P 		8.9
(-1.8)
A 		22
B 16.1
(-1.1)
A 		12.5
(-2.1)
A 		9.2
(-3)
A 		9.2
(-3)
P 		31.1
(3)
P 		15.1
(-1.4)
P 		22
C 15.8
(2.9)
A 		15.9
(3)
P 		6.7
(-3)
A 		7.5
(-2.5)
A 		13.2
(1.2)
M 		14.2
(1.9)
A 		9
avr 13.3
(-1.1) 		11
(-2) 		12.2
(-1.5) 		8.4
(-3) 		23.5
(3) 		12.7
(-1.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11748
Sequence Type Exemplar sequence
Representative Public ID ZK1055.2 NCBI
Target Description ZK1055.2 /REP_DB=WormBase Gene ID /WP=CE18471 /TR=O76446 /GB=AAC19260.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072275 NCBI Caenorhabditis elegans ZK1055.2 (ZK1055.2) mRNA, complete cds. 11/11 None
SNAP00000018289 ENSEMBL cdna:SNAP chromosome:CEL140:V:6594663:6596228:1 11/11 None
GENEFINDER00000018297 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6594813:6596660:1 11/11 None
ZK1055.2 ENSEMBL cdna:known chromosome:CEL140:V:6595103:6596228:1 gene:ZK1055.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6595102-6596228(+) 99.11 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1055.2
Entrez Gene 191511 Entrez gene
SwissProt O76446 EMBL-EBI
WormBase CE18471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-179
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-165
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-155
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-130
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-126
blast CAB03436 Hypothetical protein T26E4.7 [Caenorhabditis elegans] ref|NP_506937.1| T26E4.7 [Caenorhabditis elegans] 1.0E-125
blast CAE71912 Hypothetical protein CBG18974 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185829_AT
taatggagcacttcatattttccttgccgaaaagttgttcccacaggcttctgcaaatac
gaaagtatgcaaaaaagcttataacaattctaaaaattttgatgatctcttcacctacga
gtcatgtatccgagcaatatttggcgtatccactgattttggaaaagttagaattatgaa
aaaaggaacaggatgggctaaagacggctggctgacatcaatgatgtggcatccagagtt
agatttcatgttccatggttggaaaacgaatcaattgagagaaacgccgaatgtgaagct
tgagcctagccaaatgggacgagatttttggtataatcctttgagtgggcctatagatct
tcaaaaatgtagtcctcaaaattcgacatggtcatacgattcacgacttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGGAGCACTTCATATTTTCCTT 253 637 393 Antisense
CTTGCCGAAAAGTTGTTCCCACAGG 653 215 415 Antisense
TGTTCCCACAGGCTTCTGCAAATAC 9 563 428 Antisense
AATTTTGATGATCTCTTCACCTACG 459 175 487 Antisense
TCACCTACGAGTCATGTATCCGAGC 706 623 503 Antisense
TCCGAGCAATATTTGGCGTATCCAC 685 593 521 Antisense
GGGCTAAAGACGGCTGGCTGACATC 253 493 587 Antisense
GAAGCTTGAGCCTAGCCAAATGGGA 567 337 687 Antisense
GGTATAATCCTTTGAGTGGGCCTAT 547 503 722 Antisense
GAGTGGGCCTATAGATCTTCAAAAA 129 401 735 Antisense
CATGGTCATACGATTCACGACTTCG 166 209 779 Antisense
Sequence Source Affymetrix Proprietary Database