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[185828_at]

Description R09B5.10 /REP_DB=WormBase Gene ID /WP=CE12636 /TR=O44614 /GB=AAB94217.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 09      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 2.8
(-2.9)
A 		8.2
(-2.3)
A 		1.5
(-3)
A 		57.2
(3)
A 		56
B 1.5
(-3)
A 		3.2
(-2.9)
A 		24.2
(-1.1)
A 		73.8
(3)
A 		72
C 2
(-3)
A 		5.2
(-2.8)
A 		3.8
(-2.9)
A 		108.8
(3)
P 		107
avr 2.1
(-3) 		5.5
(-2.7) 		9.8
(-2.4) 		79.9
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.6
(-2.7)
A 		1.6
(-3)
A 		4.9
(-2.5)
A 		2.4
(-2.9)
A 		2.8
(-2.8)
A 		39.5
(3)
A 		38
B 1.7
(-2.7)
A 		2.4
(-2.2)
A 		3.1
(-1.6)
A 		7.6
(1.8)
A 		1.3
(-3)
A 		9.2
(3)
A 		8
C 1.5
(-3)
A 		5
(-2.1)
A 		3
(-2.6)
A 		20.7
(2.2)
A 		23.8
(3)
A 		20.2
(2)
A 		22
avr 2.3
(-3) 		3
(-2.8) 		3.7
(-2.6) 		10.2
(-0.7) 		9.3
(-1) 		23
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1
(-2.6)
A 		1.8
(-2)
A 		0.4
(-3)
A 		8.4
(3)
A 		8
B 0.5
(-3)
A 		0.8
(-2.9)
A 		5.6
(-1)
A 		15.7
(3)
A 		15
C 0.6
(-3)
A 		1.5
(-2.7)
A 		1.3
(-2.8)
A 		18.3
(3)
P 		18
avr 0.7
(-3) 		1.4
(-2.7) 		2.4
(-2.2) 		14.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		9.6
(3)
A 		9
B 0.6
(-2.8)
A 		0.8
(-2.4)
A 		0.7
(-2.6)
A 		2
(0.1)
A 		0.5
(-3)
A 		3.4
(3)
A 		3
C 0.5
(-3)
A 		1.5
(-2.2)
A 		0.8
(-2.8)
A 		4.2
(0.1)
A 		7.7
(3)
A 		6.8
(2.3)
A 		7
avr 0.6
(-3) 		1
(-2.6) 		0.9
(-2.7) 		2.3
(-1.3) 		3
(-0.6) 		6.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15887
Sequence Type Exemplar sequence
Representative Public ID R09B5.10 NCBI
Target Description R09B5.10 /REP_DB=WormBase Gene ID /WP=CE12636 /TR=O44614 /GB=AAB94217.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071014 NCBI Caenorhabditis elegans CaeNaCin (Caenorhabditis bacteriocin) family member (cnc-5) (cnc-5) mRNA, complete cds. 11/11 None
SNAP00000025905 ENSEMBL cdna:SNAP chromosome:CEL140:V:1445210:1445661:1 11/11 None
R09B5.10 ENSEMBL cdna:known chromosome:CEL140:V:1445210:1445661:1 gene:R09B5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1445209-1445661(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cnc-5
Ensembl R09B5.10
Entrez Gene 187729 Entrez gene
SwissProt O44614 EMBL-EBI
WormBase CE12636 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503415.1 2 7-29,44-66
R09B5.10 2 7-29,44-66
SNAP00000025905 2 7-29,44-66
Sequence
Target Sequence 
>C. ELEGANS:185828_AT
atgcttcgttttacctgcattcttcttctagcaatgctcgctcttgcttctgcccaatgg
ggatacaactcatacggtggatataatagttatggtaattatggagggtatggtggagga
tacaataatgggtacggggtgaacgctaatcttggcgttggtggaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCGTTTTACCTGCATTCTTC 475 43 13 Antisense
TTTACCTGCATTCTTCTTCTAGCAA 546 673 22 Antisense
ATTCTTCTTCTAGCAATGCTCGCTC 533 11 31 Antisense
TCTGCCCAATGGGGATACAACTCAT 73 609 61 Antisense
TGGGGATACAACTCATACGGTGGAT 309 551 70 Antisense
GATACAACTCATACGGTGGATATAA 555 423 74 Antisense
ATGGTAATTATGGAGGGTATGGTGG 255 51 104 Antisense
GGAGGATACAATAATGGGTACGGGG 451 497 127 Antisense
GGGTACGGGGTGAACGCTAATCTTG 88 493 142 Antisense
GGGTGAACGCTAATCTTGGCGTTGG 327 497 149 Antisense
GCTAATCTTGGCGTTGGTGGAAGAG 67 303 157 Antisense
Sequence Source Affymetrix Proprietary Database