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[185827_at]

Description Y62E10A.8 /REP_DB=WormBase Gene ID /WP=CE22697 /TR=Q9U1X7 /GB=CAB60597.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 82      6grp_total > 67      4grp_total > 19      6grp_highest_sub > Da      6grp_cgc > 47      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 307.6
(-0.1)
P 		286.1
(-1.2)
P 		251
(-3)
P 		368.5
(3)
P 		118
B 333.8
(-1.7)
P 		358.8
(-1)
P 		286.7
(-3)
P 		504.4
(3)
P 		218
C 273.7
(-3)
P 		394.4
(0.2)
P 		329.9
(-1.5)
P 		502.5
(3)
P 		229
avr 305
(-2.4) 		346.4
(-1) 		289.2
(-3) 		458.5
(3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 194
(-3)
P 		245.1
(-2)
P 		510.3
(2.9)
P 		316.2
(-0.7)
P 		283.9
(-1.3)
P 		514.6
(3)
P 		321
B 376.4
(-0.7)
P 		301.6
(-2.6)
P 		287.7
(-3)
P 		292
(-2.9)
P 		378.3
(-0.6)
P 		514.7
(3)
P 		227
C 349.1
(-0.7)
P 		358.6
(-0.5)
P 		339
(-0.9)
P 		290.7
(-1.9)
P 		235.8
(-3)
P 		531.1
(3)
P 		295
avr 306.5
(-2.8) 		301.8
(-2.9) 		379
(-0.8) 		299.6
(-3) 		299.3
(-3) 		520.1
(3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 112
(3)
P 		62.1
(-2.2)
P 		65.6
(-1.8)
P 		53.9
(-3)
P 		58
B 106.4
(2.8)
P 		88.6
(0.2)
P 		66.4
(-3)
P 		107.5
(3)
P 		41
C 90.6
(-1.8)
P 		113.4
(2.7)
P 		115
(3)
P 		84.7
(-3)
P 		30
avr 103
(3) 		88
(-1.3) 		82.3
(-2.9) 		82
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 35.8
(-3)
P 		87.2
(0.4)
P 		111.1
(2)
P 		80.2
(-0)
P 		85.7
(0.3)
P 		125.3
(3)
P 		90
B 131
(0)
P 		100.4
(-1.5)
P 		69.9
(-3)
P 		77.3
(-2.6)
P 		153.7
(1.1)
P 		191.9
(3)
P 		122
C 129.4
(0.6)
P 		109.4
(-0.4)
P 		86.3
(-1.6)
P 		58.5
(-3)
P 		76.3
(-2.1)
P 		177.8
(3)
P 		119
avr 98.7
(-1.3) 		99
(-1.3) 		89.1
(-1.9) 		72
(-3) 		105.2
(-0.9) 		165
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10052
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.8 NCBI
Target Description Y62E10A.8 /REP_DB=WormBase Gene ID /WP=CE22697 /TR=Q9U1X7 /GB=CAB60597.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070173 NCBI Caenorhabditis elegans PHosducin-Like Protein family member (phlp-1) (phlp-1) mRNA, complete cds. 11/11 None
SNAP00000008076 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13377994:13380294:1 11/11 None
GENEFINDER00000008102 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13377994:13380294:1 11/11 None
Y62E10A.8 ENSEMBL cdna:known chromosome:CEL140:IV:13377994:13380294:1 gene:Y62E10A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13377999-13380300(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol phlp-1
Ensembl Y62E10A.8
Entrez Gene 190455 Entrez gene
SwissProt Q9U1X7 EMBL-EBI
WormBase CE22697 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7602 phototransduction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60597 Hypothetical protein Y62E10A.8 [Caenorhabditis elegans] ref|NP_502574.1| PHosducin-Like Protein family member (phlp-1) [Caenorhabditis elegans] 1.0E-138
blast CAE58613 Hypothetical protein CBG01780 [Caenorhabditis briggsae] 1.0E-120
blast EAL30637 GA20503-PA [Drosophila pseudoobscura] 9.0E-21
Sequence
Target Sequence 
>C. ELEGANS:185827_AT
gctcaatgagttcaaagcgttcagagaacagactagattagctgtcgaatcaaaaaatca
gaaattaattgagcaagcgaagaaaggaatgatgattggatcgaaagaagaacgagaaaa
agcacaacgagaagatgatgaagatgaggattttgagatgactttggagggattaaaagc
gaagagacttagagaaatgagaaaaattgcagcaaatcgggttattgaaatgactgataa
gaaacaatattcggatgccgttgatggaagttcatcatatcttctctgtgttctaatata
tgagcctgaatccgatgaatgtgaatatttgacacgaatcgttaagattctcgccgccga
ttgtccgaaaaccaaattcgttcgagcgacaagcactcttcttgaaatgagcagagcatt
tagaacgaacggtgtgccgtgccttcaattctattcgaacggaaatctcattggaaattt
cgtgaaaatctccgcaatactgggacaggattatgattgcaaaaagttgaccaaattctt
gagaggacaacacattgacttgatggctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAATGAGTTCAAAGCGTTCAGA 613 301 174 Antisense
ATTCGGATGCCGTTGATGGAAGTTC 580 9 422 Antisense
TTCATCATATCTTCTCTGTGTTCTA 273 689 444 Antisense
TATATGAGCCTGAATCCGATGAATG 76 661 470 Antisense
CGAATCGTTAAGATTCTCGCCGCCG 355 251 508 Antisense
GAAAACCAAATTCGTTCGAGCGACA 191 353 540 Antisense
TCGAGCGACAAGCACTCTTCTTGAA 225 601 555 Antisense
AGAACGAACGGTGTGCCGTGCCTTC 669 71 595 Antisense
CGTGCCTTCAATTCTATTCGAACGG 613 245 611 Antisense
AAATCTCCGCAATACTGGGACAGGA 458 117 659 Antisense
GGACAACACATTGACTTGATGGCTG 191 527 718 Antisense
Sequence Source Affymetrix Proprietary Database