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[185826_at]

Description T03F1.11 /REP_DB=WormBase Gene ID /WP=CE13116 /TR=P91423 /GB=AAB42239.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 14      6grp_total > 22      4grp_total > 12      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5053
1 2 3 4 range
A 4617.7
(-0.6)
P 		3002.3
(-2.5)
P 		2574.8
(-3)
P 		7627.6
(3)
P 		5053
B 4655.5
(-1)
P 		3736.3
(-2.7)
P 		3579.8
(-3)
P 		6862.3
(3)
P 		3283
C 4685.7
(-0.4)
P 		4153.1
(-1.3)
P 		3107.8
(-3)
P 		6748.5
(3)
P 		3641
avr 4653
(-0.6) 		3630.6
(-2.2) 		3087.5
(-3) 		7079.5
(3) 		3992

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4590
1 2 3 4 5 6 range
A 3741.7
(1.3)
P 		4365.9
(2.1)
P 		4980.5
(3)
P 		3311.2
(0.7)
P 		1688
(-1.6)
P 		700.1
(-3)
P 		4280
B 4304
(1.6)
P 		5136.6
(2.8)
P 		5290.5
(3)
P 		2248.7
(-1.3)
P 		2546.4
(-0.9)
P 		1030.4
(-3)
P 		4260
C 4706
(2.7)
P 		4884.2
(3)
P 		2959.3
(0)
P 		2779.2
(-0.3)
P 		1901
(-1.6)
P 		1001.4
(-3)
P 		3883
avr 4250.6
(2.2) 		4795.6
(3) 		4410.1
(2.4) 		2779.7
(-0.1) 		2045.1
(-1.2) 		910.6
(-3) 		3885
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1030
1 2 3 4 range
A 1681.3
(3)
P 		651.7
(-3)
P 		673.1
(-2.9)
P 		1116.5
(-0.3)
P 		1030
B 1484.6
(3)
P 		922.8
(-2.1)
P 		829.5
(-3)
P 		1462.4
(2.8)
P 		655
C 1551.1
(3)
P 		1194
(-1.6)
P 		1083.2
(-3)
P 		1137.9
(-2.3)
P 		468
avr 1572.3
(3) 		922.8
(-2.5) 		861.9
(-3) 		1238.9
(0.2) 		710

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1574
1 2 3 4 5 6 range
A 689.8
(-0.7)
P 		1552.7
(3)
P 		1084.6
(1)
P 		839.8
(-0.1)
P 		509.4
(-1.5)
P 		170.5
(-3)
P 		1382
B 1497.6
(2)
P 		1709.8
(3)
P 		1284.7
(1.1)
P 		595.6
(-2)
P 		1034.6
(-0.1)
P 		384.2
(-3)
P 		1326
C 1744.3
(3)
P 		1490.3
(1.9)
P 		753.2
(-1.2)
P 		558.9
(-2)
P 		615.1
(-1.8)
P 		335.2
(-3)
P 		1409
avr 1310.6
(1.7) 		1584.3
(3) 		1040.8
(0.5) 		664.8
(-1.3) 		719.7
(-1) 		296.6
(-3) 		1288
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.67
Sequence Type Exemplar sequence
Representative Public ID T03F1.11 NCBI
Target Description T03F1.11 /REP_DB=WormBase Gene ID /WP=CE13116 /TR=P91423 /GB=AAB42239.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058840 NCBI Caenorhabditis elegans T03F1.11 (T03F1.11) mRNA, complete cds. 11/11 None
SNAP00000013114 ENSEMBL cdna:SNAP chromosome:CEL140:I:3853855:3854157:1 11/11 None
GENEFINDER00000013129 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3853942:3854157:1 11/11 None
T03F1.11 ENSEMBL cdna:known chromosome:CEL140:I:3853837:3854247:1 gene:T03F1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3853941-3854157(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03F1.11
Entrez Gene 171962 Entrez gene
SwissProt P91423 EMBL-EBI
WormBase CE37040 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491241 T03F1.11 [Caenorhabditis elegans] gb|AAB42239.2| Hypothetical protein T03F1.11 [Caenorhabditis elegans] 7.0E-41
blast CAE66632 Hypothetical protein CBG11969 [Caenorhabditis briggsae] 3.0E-34
blast NP_491241 T03F1.11 [Caenorhabditis elegans] gb|AAB42239.2| Hypothetical protein T03F1.11 [Caenorhabditis elegans] 3.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.0E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 4.3E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.016
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 4.3E-7
Sequence
Target Sequence 
>C. ELEGANS:185826_AT
tgttttctctccacgacaaggatatgtctggattcatcagcaaagatgatgtgatctgca
tgttgttgggagctgagaaggacgataagaaggatcccgtgttcaagacgaacctcaaat
ttttgattcaagtcatcaaggaggccgacaaagacggagactccaaaatcactttcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTCTCTCCACGACAAGGATAT 400 561 14 Antisense
GGATATGTCTGGATTCATCAGCAAA 280 511 33 Antisense
GATGATGTGATCTGCATGTTGTTGG 517 409 58 Antisense
GATCTGCATGTTGTTGGGAGCTGAG 211 417 66 Antisense
GTTGTTGGGAGCTGAGAAGGACGAT 519 291 75 Antisense
GGACGATAAGAAGGATCCCGTGTTC 399 519 93 Antisense
GGATCCCGTGTTCAAGACGAACCTC 454 513 105 Antisense
GACGAACCTCAAATTTTTGATTCAA 5 381 120 Antisense
GATTCAAGTCATCAAGGAGGCCGAC 327 431 138 Antisense
GAGGCCGACAAAGACGGAGACTCCA 365 405 154 Antisense
CGGAGACTCCAAAATCACTTTCGAT 163 243 168 Antisense
Sequence Source Affymetrix Proprietary Database