[Home] | [Total List]

[185825_s_at]

Description T15B7.15 /REP_DB=WormBase Gene ID /WP=CE13674 /TR=O17039 /GB=AAB69968.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 22.9
(0.6)
A 		8.3
(-2.6)
A 		33.7
(3)
A 		6.5
(-3)
A 		27
B 44.1
(2.2)
A 		50.5
(3)
A 		4.5
(-3)
A 		10.7
(-2.2)
A 		46
C 32.2
(-1.4)
A 		42
(0.1)
A 		21.6
(-3)
A 		61.7
(3)
A 		40
avr 33.1
(2.8) 		33.6
(3) 		19.9
(-3) 		26.3
(-0.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.9
(3)
A 		17.3
(-1.2)
A 		52.3
(2.9)
P 		2.1
(-3)
A 		30
(0.3)
A 		40.6
(1.5)
A 		51
B 33.4
(1)
A 		30.3
(0.5)
A 		48.2
(3)
A 		4.5
(-3)
A 		19.7
(-0.9)
A 		26.6
(0)
A 		44
C 24
(1.9)
A 		19.1
(-1.2)
A 		22.9
(1.2)
A 		16.2
(-3)
A 		25.7
(3)
A 		22.9
(1.2)
A 		10
avr 36.8
(2.2) 		22.2
(-0.4) 		41.1
(3) 		7.6
(-3) 		25.1
(0.1) 		30
(1) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.3
(2.6)
A 		1.8
(-2.3)
A 		8.8
(3)
A 		0.9
(-3)
A 		8
B 14.1
(3)
A 		12.5
(2.3)
A 		1
(-3)
A 		2.3
(-2.4)
A 		13
C 10.7
(1.2)
A 		12.1
(3)
A 		7.5
(-3)
A 		10.4
(0.8)
A 		5
avr 11
(3) 		8.8
(1) 		5.8
(-1.8) 		4.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.7
(2.1)
A 		6.2
(0.1)
A 		11.4
(3)
P 		0.5
(-3)
A 		9
(1.7)
A 		9.9
(2.2)
A 		11
B 11.6
(2.9)
A 		10.1
(2.1)
A 		11.7
(3)
A 		1.2
(-3)
A 		8
(0.9)
A 		9.9
(2)
A 		11
C 8.9
(3)
A 		5.8
(-0.3)
A 		5.8
(-0.3)
A 		3.3
(-3)
A 		8.3
(2.4)
A 		7.7
(1.7)
A 		6
avr 10.1
(3) 		7.4
(1.1) 		9.6
(2.6) 		1.7
(-3) 		8.4
(1.8) 		9.2
(2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185825_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11686
Sequence Type Exemplar sequence
Representative Public ID T15B7.15 NCBI
Target Description T15B7.15 /REP_DB=WormBase Gene ID /WP=CE13674 /TR=O17039 /GB=AAB69968.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072338 NCBI Caenorhabditis elegans T15B7.15 (T15B7.15) mRNA, complete cds. 11/11 None
SNAP00000035391 ENSEMBL cdna:SNAP chromosome:CEL140:V:6839319:6841138:-1 11/11 None
GENEFINDER00000035402 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6839328:6840999:-1 11/11 None
T15B7.15 ENSEMBL cdna:known chromosome:CEL140:V:6839319:6841224:-1 gene:T15B7.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6839319-6841139(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.15
Entrez Gene 179074 Entrez gene
SwissProt O17039 EMBL-EBI
WormBase CE13674 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69968 Hypothetical protein T15B7.15 [Caenorhabditis elegans] ref|NP_504739.1| T15B7.15 [Caenorhabditis elegans] 1.0E-178
blast AAB69968 Hypothetical protein T15B7.15 [Caenorhabditis elegans] ref|NP_504739.1| T15B7.15 [Caenorhabditis elegans] 1.0E-168
blast CAE71960 Hypothetical protein CBG19030 [Caenorhabditis briggsae] 1.0E-157
blast CAE71960 Hypothetical protein CBG19030 [Caenorhabditis briggsae] 1.0E-151
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 3.0E-10
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 4.0E-10
Sequence
Target Sequence 
>C. ELEGANS:185825_S_AT
tgagcgccgagttcgagcaagctgttgctgagatccgtattgaagcaagtctggagagca
aaggtcacactctgatgaataatcaagtaattgaacatttggaattagaacttaccagaa
agaagcaagatatgttacgaatggagcaaatgctcgaggagaaacaatccgaattgacgc
aagaaataggaaaaactcaggaacgtgaagaagagaatttaaaattacggagtcttttgg
aaaagagtggccagactactgaaaaggcattgaaagatagtaagagacgactggaagaat
cggagaataaacgaaaaactactctcgagaaatatattcaaattgagaatgaattgaata
gtaaactagacgaagctcttcaaaactcagacaagtgccaaaaaatgacgtcacttcttg
aagatcagcttctgagagaacaacagacaaggaaagcgacaattgattctcacaaggctc
aaaataagaaaattgaagaactcaaagtattctttaaggatgttctatccagtgaagaag
gtcttctagacgaagttataaaagagaatcgaaatgctgtgtttgctcatcttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCGCCGAGTTCGAGCAAGCTGT 690 567 512 Antisense
AAGCTGTTGCTGAGATCCGTATTGA 38 151 530 Antisense
GAGATCCGTATTGAAGCAAGTCTGG 534 395 541 Antisense
CAAGTCTGGAGAGCAAAGGTCACAC 291 183 557 Antisense
AGCAAAGGTCACACTCTGATGAATA 627 75 568 Antisense
GCTCTTCAAAACTCAGACAAGTGCC 642 299 886 Antisense
GTGCCAAAAAATGACGTCACTTCTT 483 477 906 Antisense
GTCACTTCTTGAAGATCAGCTTCTG 321 465 921 Antisense
GCGACAATTGATTCTCACAAGGCTC 641 287 967 Antisense
GGATGTTCTATCCAGTGAAGAAGGT 73 515 1029 Antisense
AAATGCTGTGTTTGCTCATCTTGCT 593 117 1083 Antisense
Sequence Source Affymetrix Proprietary Database