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[185823_s_at]

Description Y75B12B.9 /REP_DB=WormBase Gene ID /WP=CE15709 /TR=O17664 /GB=CAA21767.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.7
(-2.9)
A 		26.2
(0.9)
A 		5.2
(-3)
A 		37.5
(3)
A 		32
B 15.9
(-0.5)
A 		36.4
(3)
A 		1.3
(-3)
A 		20.4
(0.3)
A 		35
C 4
(-2.6)
A 		7.1
(3)
A 		3.8
(-3)
A 		6.5
(1.9)
A 		3
avr 8.5
(-1.5) 		23.2
(3) 		3.4
(-3) 		21.5
(2.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.3
(-0.3)
A 		2.3
(-3)
A 		4.7
(-1.7)
A 		13.3
(3)
A 		9
(0.7)
A 		2.5
(-2.9)
A 		11
B 5
(-0.7)
A 		6.2
(0.3)
A 		4
(-1.5)
A 		2.2
(-3)
A 		9.5
(3)
A 		3
(-2.3)
A 		7
C 7.9
(3)
A 		2.1
(-2.8)
A 		6.4
(1.5)
A 		4.2
(-0.7)
A 		1.9
(-3)
A 		2.3
(-2.6)
A 		6
avr 6.7
(2.9) 		3.5
(-1.7) 		5
(0.4) 		6.6
(2.7) 		6.8
(3) 		2.6
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(-2)
A 		5.7
(3)
A 		1.4
(-3)
A 		5.5
(2.7)
A 		4
B 5.1
(0.3)
A 		9
(3)
A 		0.3
(-3)
A 		4.3
(-0.2)
A 		9
C 1.3
(-1.8)
A 		2.1
(3)
A 		1.3
(-1.8)
A 		1.1
(-3)
A 		1
avr 2.8
(-0.7) 		5.6
(3) 		1
(-3) 		3.6
(0.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.4
(-1.3)
A 		0.8
(-2.6)
A 		1
(-2.1)
A 		3.4
(3)
A 		2.7
(1.5)
A 		0.6
(-3)
A 		3
B 1.7
(-1)
A 		2
(-0.5)
A 		1
(-2.3)
A 		0.6
(-3)
A 		3.9
(3)
A 		1.1
(-2.1)
A 		3
C 2.9
(3)
A 		0.6
(-3)
A 		1.6
(-0.4)
A 		0.8
(-2.5)
A 		0.6
(-3)
A 		0.8
(-2.5)
A 		2
avr 2
(1.5) 		1.1
(-1.9) 		1.2
(-1.5) 		1.6
(0) 		2.4
(3) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185823_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14363
Sequence Type Exemplar sequence
Representative Public ID Y75B12B.9 NCBI
Target Description Y75B12B.9 /REP_DB=WormBase Gene ID /WP=CE15709 /TR=O17664 /GB=CAA21767.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074355 NCBI Caenorhabditis elegans C41G6.12 (C41G6.12) mRNA, complete cds. 11/11 None
GENEFINDER00000027067 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15205743:15209091:1 9/11 None
Y75B12B.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15205611:15206304:1 gene:Y75B12B.9 11/11 None
C41G6.12 ENSEMBL cdna:known chromosome:CEL140:V:15209674:15210367:-1 gene:C41G6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15205610-15206304(+) 100.0 100.0
chrV:15209673-15210367(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B12B.9
C41G6.12
Entrez Gene 183388 Entrez gene
SwissProt O17664 EMBL-EBI
WormBase CE15709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02836 Hypothetical protein C41G6.12 [Caenorhabditis elegans] ref|NP_506756.1| C41G6.12 [Caenorhabditis elegans] 1.0E-110
blast CAB02836 Hypothetical protein C41G6.12 [Caenorhabditis elegans] ref|NP_506756.1| C41G6.12 [Caenorhabditis elegans] 6.0E-83
blast AAC04405 Seven tm receptor protein 63 [Caenorhabditis elegans] ref|NP_503931.1| Seven TM Receptor family member (str-63) [Caenorhabditis elegans] 2.0E-56
blast NP_503907 Seven TM Receptor family member (str-64) [Caenorhabditis elegans] gb|AAC48112.1| Seven tm receptor protein 64 [Caenorhabditis elegans] 2.0E-55
blast AAC04405 Seven tm receptor protein 63 [Caenorhabditis elegans] ref|NP_503931.1| Seven TM Receptor family member (str-63) [Caenorhabditis elegans] 4.0E-39
blast NP_503907 Seven TM Receptor family member (str-64) [Caenorhabditis elegans] gb|AAC48112.1| Seven tm receptor protein 64 [Caenorhabditis elegans] 3.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506756.1 5 5-27,40-62,106-128,155-177,192-214
C41G6.12 5 5-27,40-62,106-128,155-177,192-214
GENEFINDER00000027067 6 62-84,111-133,148-170,227-249,275-297,310-332
Sequence
Target Sequence 
>C. ELEGANS:185823_S_AT
cacacttattttatacttcgttgcgattcagtttataaaccgacatttatgccttttgaa
tgcaaattttgctgcaaaacttgaaggaatttatggatattgtctaatgtcaattccatt
aattccgggaccaacttttgccttatcaattaaaatagtttcaagagaaacagtatttga
taatgaaatgcgaaatctaatgtttgagacctatagtttggtggtatacaaaatcacgaa
gttcaacatcacaccatattatcccaatggctcagtacagtgggaaaactttgtagtact
tgcaattggatgtttcttcaatgtcattgcctattctatcatcatgtattgtggaatcaa
aatgcacttcaatatgcaaaaaatgcttgccagattttcaatggctcagcaaaatatcca
gaaacagttgctccgtgcattggttgcacagagtattggaccaactatttttctggtttt
tccagccgtcccttttctcatgagtcctttattgccaccgttgtttgacttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACTTATTTTATACTTCGTTGCG 697 193 39 Antisense
AAACCGACATTTATGCCTTTTGAAT 289 111 75 Antisense
GTCAATTCCATTAATTCCGGGACCA 413 463 147 Antisense
GGACCAACTTTTGCCTTATCAATTA 652 511 166 Antisense
TCAACATCACACCATATTATCCCAA 224 631 281 Antisense
TTATCCCAATGGCTCAGTACAGTGG 348 671 297 Antisense
GGATGTTTCTTCAATGTCATTGCCT 672 513 346 Antisense
GTCATTGCCTATTCTATCATCATGT 40 469 361 Antisense
AACAGTTGCTCCGTGCATTGGTTGC 479 137 461 Antisense
TTCTCATGAGTCCTTTATTGCCACC 25 691 533 Antisense
TATTGCCACCGTTGTTTGACTTGAA 153 665 548 Antisense
Sequence Source Affymetrix Proprietary Database