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[185822_s_at]

Description T19H12.3 /REP_DB=WormBase Gene ID /WP=CE13756 /TR=O01613 /GB=AAC69028.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      6grp_highest_nonorm > 80      6grp_total > 53      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 179.3
(2.9)
P 		156.1
(1.7)
P 		181.3
(3)
P 		63.9
(-3)
A 		117
B 214.7
(2.9)
P 		209
(2.7)
P 		216
(3)
P 		94.8
(-3)
M 		121
C 150.8
(-0.2)
P 		228.1
(3)
P 		200.7
(1.8)
P 		85.3
(-3)
A 		143
avr 181.6
(2.1) 		197.7
(2.9) 		199.3
(3) 		81.3
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 80.7
(-3)
P 		298.1
(0)
P 		510.9
(3)
P 		174.6
(-1.7)
P 		112.7
(-2.6)
P 		135.3
(-2.2)
P 		430
B 166.9
(-3)
P 		268.2
(0)
P 		368.1
(3)
P 		251.2
(-0.5)
P 		225.8
(-1.2)
P 		195.8
(-2.1)
P 		201
C 177.1
(-3)
P 		206.1
(-2.2)
P 		398.9
(3)
P 		260.5
(-0.7)
P 		205.3
(-2.2)
P 		252.6
(-1)
P 		222
avr 141.6
(-3) 		257.5
(-0.6) 		426
(3) 		228.8
(-1.2) 		181.3
(-2.2) 		194.6
(-1.9) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 65.3
(3)
P 		33.9
(-0.4)
P 		47.4
(1.1)
P 		9.3
(-3)
A 		56
B 68.5
(3)
P 		51.6
(0.9)
P 		50
(0.7)
P 		20.2
(-3)
M 		48
C 49.9
(0.8)
P 		65.6
(2.5)
P 		69.9
(3)
P 		14.4
(-3)
A 		56
avr 61.2
(3) 		50.4
(1.6) 		55.8
(2.3) 		14.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 14.9
(-3)
P 		106
(2.7)
P 		111.3
(3)
P 		44.3
(-1.2)
P 		34
(-1.8)
P 		33
(-1.9)
P 		96
B 58.1
(-3)
P 		89.3
(2.6)
P 		89.4
(2.6)
P 		66.5
(-1.5)
P 		91.7
(3)
P 		73
(-0.3)
P 		34
C 65.6
(-1.4)
P 		62.9
(-1.7)
P 		101.5
(3)
P 		52.4
(-3)
P 		66.4
(-1.3)
P 		84.6
(0.9)
P 		49
avr 46.2
(-3) 		86.1
(1.4) 		100.7
(3) 		54.4
(-2.1) 		64
(-1) 		63.5
(-1.1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185822_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15893
Sequence Type Exemplar sequence
Representative Public ID T19H12.3 NCBI
Target Description T19H12.3 /REP_DB=WormBase Gene ID /WP=CE13756 /TR=O01613 /GB=AAC69028.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028977 NCBI Caenorhabditis elegans T19H12.3 (T19H12.3) mRNA, complete cds. 11/11 None
T19H12.3a ENSEMBL cdna:known chromosome:CEL140:V:4884608:4886584:1 gene:T19H12.3 11/11 A 
T19H12.3b ENSEMBL cdna:known chromosome:CEL140:V:4885515:4886623:1 gene:T19H12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4884607-4886584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19H12.3
Entrez Gene 178879 Entrez gene
SwissProt Q8MPT1 EMBL-EBI
WormBase CE30836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69028 Hypothetical protein T19H12.12 [Caenorhabditis elegans] ref|NP_001024147.1| T19H12.12 [Caenorhabditis elegans] 3.0E-68
blast AAC69032 Udp-glucuronosyltransferase protein 12 [Caenorhabditis elegans] ref|NP_504309.1| T19H12.9 [Caenorhabditis elegans] 4.0E-65
blast AAM45361 Hypothetical protein T19H12.3 [Caenorhabditis elegans] ref|NP_001024148.1| T19H12.3 [Caenorhabditis elegans] 5.0E-65
blast CAE64222 Hypothetical protein CBG08855 [Caenorhabditis briggsae] 2.0E-49
blast CAB01219 Hypothetical protein K02E11.3 [Caenorhabditis elegans] ref|NP_506523.1| K02E11.3 [Caenorhabditis elegans] 2.0E-39
blast CAE60995 Hypothetical protein CBG04732 [Caenorhabditis briggsae] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:185822_S_AT
gatacagcattcatcggtttgccagtgtcggcaaactataggagaacgtattttaaagcg
tttgagcctgaaggtggtgaacagatatacagagtttgtaatgggaaaaacaagaaaact
tgcggtttttgggaagatgtgaagacaaagaagaaagttgcttcgggagtcaccacatac
aataagaagaagaaagctctggttatcaaaaaaatgaaggcctctgattttggaaactat
atgattggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACAGCATTCATCGGTTTGCCAG 540 423 580 Antisense
AGCATTCATCGGTTTGCCAGTGTCG 333 77 585 Antisense
GCCAGTGTCGGCAAACTATAGGAGA 359 281 600 Antisense
CGTATTTTAAAGCGTTTGAGCCTGA 121 1 626 Antisense
GCGTTTGAGCCTGAAGGTGGTGAAC 693 289 637 Antisense
GAAGGTGGTGAACAGATATACAGAG 12 335 649 Antisense
AACTTGCGGTTTTTGGGAAGATGTG 471 135 696 Antisense
AAAGTTGCTTCGGGAGTCACCACAT 127 123 733 Antisense
GAAGAAGAAAGCTCTGGTTATCAAA 311 337 765 Antisense
AATGAAGGCCTCTGATTTTGGAAAC 700 157 792 Antisense
GATTTTGGAAACTATATGATTGGAA 291 429 805 Antisense
Sequence Source Affymetrix Proprietary Database