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[185821_at]

Description T19H12.3 /REP_DB=WormBase Gene ID /WP=CE13756 /TR=O01613 /GB=AAC69028.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 0.4
(-3)
A 		8.5
(-1.7)
A 		2.7
(-2.6)
A 		37.3
(3)
A 		37
B 11
(3)
A 		7.7
(0.7)
A 		5.6
(-0.8)
A 		2.5
(-3)
A 		9
C 3.2
(-3)
A 		4.2
(-2.5)
A 		14.3
(3)
A 		6.2
(-1.4)
A 		11
avr 4.9
(-3) 		6.8
(-1.9) 		7.5
(-1.5) 		15.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6
(-2.1)
A 		3.4
(-2.6)
A 		1
(-3)
A 		14.4
(-0.7)
A 		35.8
(3)
A 		4.2
(-2.4)
A 		35
B 5.6
(3)
A 		3.4
(-0.9)
A 		3.9
(0)
A 		2.4
(-2.6)
A 		2.2
(-3)
A 		2.4
(-2.6)
A 		3
C 2.5
(-0.3)
A 		2.5
(-0.3)
A 		1.1
(-3)
A 		4.2
(3)
A 		3.4
(1.5)
A 		4.2
(3)
A 		3
avr 4.7
(-1.6) 		3.1
(-2.4) 		2
(-3) 		7
(-0.5) 		13.8
(3) 		3.6
(-2.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.2
(-3)
A 		1.8
(-1.2)
A 		0.7
(-2.4)
A 		5.5
(3)
A 		5
B 3.5
(3)
A 		1.9
(-0.2)
A 		1.3
(-1.4)
A 		0.5
(-3)
A 		3
C 1
(-3)
A 		1.2
(-2.7)
A 		5
(3)
A 		1.1
(-2.9)
A 		4
avr 1.6
(-3) 		1.6
(-3) 		2.3
(2.3) 		2.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		1.2
(-2.4)
A 		0.2
(-3)
A 		3.6
(-1.1)
A 		10.8
(3)
A 		1
(-2.5)
A 		11
B 2
(3)
A 		1.1
(-0.9)
A 		1
(-1.3)
A 		0.6
(-3)
A 		0.9
(-1.7)
A 		0.9
(-1.7)
A 		1
C 0.9
(0.3)
A 		0.8
(-0.3)
A 		0.3
(-3)
A 		0.8
(-0.3)
A 		1.1
(1.4)
A 		1.4
(3)
A 		1
avr 1.3
(-1.7) 		1
(-2.2) 		0.5
(-3) 		1.7
(-1.1) 		4.3
(3) 		1.1
(-2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185821_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15893
Sequence Type Exemplar sequence
Representative Public ID T19H12.3 NCBI
Target Description T19H12.3 /REP_DB=WormBase Gene ID /WP=CE13756 /TR=O01613 /GB=AAC69028.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028977
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T19H12.3a ENSEMBL cdna:known chromosome:CEL140:V:4884608:4886584:1 gene:T19H12.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028976 3/11 Cross Hyb Matching Probes None
SNAP00000027979 3/11 Cross Hyb Matching Probes None
GENEFINDER00000027993 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4884607-4886584(+) 100.0 100.0
Public Domain and Genome References
Ensembl T19H12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69028 Hypothetical protein T19H12.12 [Caenorhabditis elegans] ref|NP_001024147.1| T19H12.12 [Caenorhabditis elegans] 3.0E-68
blast AAC69032 Udp-glucuronosyltransferase protein 12 [Caenorhabditis elegans] ref|NP_504309.1| T19H12.9 [Caenorhabditis elegans] 4.0E-65
blast CAE64222 Hypothetical protein CBG08855 [Caenorhabditis briggsae] 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:185821_AT
gaagagttgttgaaagctgaaccccaagccttctcattcttttgggactctcatttggtt
ggaaatccagttattggagcatttctgatgccgaaattgatcggtggagagttcaaaata
acagcaatggaggttctcagcgatcgcaatatgttaaaattgcagttcgtattaaaacat
gctcggctgataaaaaaaagctcgacgggcgtcgatacccgtttagcaatttggcaattc
ggaaattttctaattttttttgtgttggacaagaaaaattgtatatttcttcatcaaaat
ttctcaacttcgggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGTTGTTGAAAGCTGAACCCC 380 335 259 Antisense
TGTTGAAAGCTGAACCCCAAGCCTT 439 561 266 Antisense
CCAAGCCTTCTCATTCTTTTGGGAC 373 277 282 Antisense
GGTTCTCAGCGATCGCAATATGTTA 327 507 390 Antisense
ATATGTTAAAATTGCAGTTCGTATT 385 19 407 Antisense
TCGTATTAAAACATGCTCGGCTGAT 129 603 425 Antisense
AAGCTCGACGGGCGTCGATACCCGT 197 147 456 Antisense
GACGGGCGTCGATACCCGTTTAGCA 531 281 462 Antisense
GATACCCGTTTAGCAATTTGGCAAT 426 423 472 Antisense
TTTGGCAATTCGGAAATTTTCTAAT 377 665 488 Antisense
ATCAAAATTTCTCAACTTCGGGAGT 197 27 551 Antisense
Sequence Source Affymetrix Proprietary Database