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[185820_at]

Description F57B10.9 /REP_DB=WormBase Gene ID /WP=CE11314 /TR=O44735 /GB=AAB96726.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      6grp_total > 68      4grp_total > 23      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 134.7
(3)
P 		81.6
(-1.5)
A 		63.5
(-3)
A 		107.2
(0.7)
A 		71
B 171.8
(3)
P 		43
(-3)
A 		92.2
(-0.7)
A 		138.7
(1.5)
P 		129
C 174.9
(3)
P 		105.1
(-0.5)
A 		53.9
(-3)
A 		166.4
(2.6)
P 		121
avr 160.5
(3) 		76.6
(-2.6) 		69.9
(-3) 		137.4
(1.5) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 158.8
(-2.3)
P 		134.2
(-3)
P 		153.8
(-2.5)
P 		196.4
(-1.3)
P 		238.3
(-0.1)
P 		349.4
(3)
P 		215
B 201
(-0.3)
P 		95.1
(-3)
P 		138
(-1.9)
P 		176.3
(-1)
P 		186.8
(-0.7)
P 		334.4
(3)
P 		239
C 234.3
(0.1)
P 		119.9
(-3)
M 		147.6
(-2.2)
P 		243.4
(0.4)
P 		182.1
(-1.3)
P 		339.3
(3)
P 		219
avr 198
(-0.8) 		116.4
(-3) 		146.5
(-2.2) 		205.4
(-0.6) 		202.4
(-0.7) 		341
(3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 49.1
(3)
P 		17.7
(-2.6)
A 		16.6
(-2.8)
A 		15.7
(-3)
A 		33
B 54.8
(3)
P 		10.6
(-3)
A 		21.4
(-1.5)
A 		29.6
(-0.4)
P 		44
C 57.9
(3)
P 		30.2
(-1.3)
A 		18.8
(-3)
A 		28.1
(-1.6)
P 		39
avr 53.9
(3) 		19.5
(-2.9) 		18.9
(-3) 		24.5
(-2) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 29.3
(-3)
P 		47.7
(-1)
P 		33.5
(-2.5)
P 		49.8
(-0.8)
P 		71.9
(1.6)
P 		85.1
(3)
P 		56
B 69.9
(-0.5)
P 		31.6
(-3)
P 		33.5
(-2.9)
P 		46.7
(-2)
P 		75.9
(-0.1)
P 		124.7
(3)
P 		93
C 86.8
(0.9)
P 		36.6
(-3)
M 		37.6
(-2.9)
P 		48.9
(-2)
P 		58.9
(-1.3)
P 		113.6
(3)
P 		77
avr 62
(-0.8) 		38.6
(-2.7) 		34.9
(-3) 		48.5
(-1.9) 		68.9
(-0.2) 		107.8
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185820_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.477
Sequence Type Exemplar sequence
Representative Public ID F57B10.9 NCBI
Target Description F57B10.9 /REP_DB=WormBase Gene ID /WP=CE11314 /TR=O44735 /GB=AAB96726.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059487 NCBI Caenorhabditis elegans F57B10.9 (F57B10.9) mRNA, complete cds. 11/11 None
SNAP00000011827 ENSEMBL cdna:SNAP chromosome:CEL140:I:6558820:6560746:-1 11/11 None
GENEFINDER00000011842 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6558820:6560746:-1 11/11 None
F57B10.9 ENSEMBL cdna:known chromosome:CEL140:I:6558701:6560780:-1 gene:F57B10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6558748-6560675(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B10.9
Entrez Gene 172369 Entrez gene
SwissProt O44735 EMBL-EBI
WormBase CE30546 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605089_S_AT similar to spartin cfa
CANINE_2:CFA.20380.1.S1_S_AT similar to spartin cfa
CANINE_2:CFA.339.1.S1_AT similar to spartin cfa
CANINE_2:CFAAFFX.10257.1.S1_S_AT similar to spartin cfa
CHICKEN:GGAAFFX.10921.1.S1_S_AT similar to mKIAA0610 protein gga
HG-U133A_2:212526_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133_PLUS_2:212526_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133A:212526_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HU35KSUBB:RC_R67052_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HU35KSUBC:RC_N49940_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:HS.46988.0.A1_3P_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:HS.118087.2.S1_3P_X_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:HS.118087.2.S1_3P_S_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:HS.118087.2.S1_3P_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:HS.118087.1.A1_3P_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:216965_3P_X_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133A_2:216965_X_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133_PLUS_2:216965_X_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133A:216965_X_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133_PLUS_2:236600_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133B:236600_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U95AV2:39852_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U95B:46829_AT spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133_PLUS_2:230775_S_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133B:230775_S_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133_PLUS_2:241292_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U133B:241292_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U95C:55775_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U95C:64588_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U95E:70337_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U95D:72878_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HG-U95D:91842_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HU35KSUBB:RC_AA011013_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HU35KSUBC:RC_H97239_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
HU35KSUBD:RC_N54437_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:HS.118087.0.A1_3P_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
U133_X3P:HS.223978.0.A1_3P_AT Spastic paraplegia 20, spartin (Troyer syndrome) hs
MU11KSUBB:W71635_S_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MG-U74AV2:93609_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MG-U74BV2:116623_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOE430A:1424875_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOUSE430A_2:1424875_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOUSE430_2:1424875_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOE430A:1451520_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOUSE430A_2:1451520_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOUSE430_2:1451520_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOE430A:1424876_S_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOUSE430A_2:1424876_S_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MOUSE430_2:1424876_S_AT spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) mm
MG-U74CV2:136729_AT Spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) (Spg20), mRNA mm
MU19KSUBA:TC24888_I_AT Spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) (Spg20), mRNA mm
MU19KSUBB:TC32170_AT Spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) (Spg20), mRNA mm
RAE230B:1383839_AT spastic paraplegia 20, spartin (Troyer syndrome) (predicted) rn
RAT230_2:1383839_AT spastic paraplegia 20, spartin (Troyer syndrome) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96726 Hypothetical protein F57B10.9 [Caenorhabditis elegans] ref|NP_491888.2| F57B10.9 [Caenorhabditis elegans] 0.0
blast CAE67223 Hypothetical protein CBG12661 [Caenorhabditis briggsae] 0.0
blast BAC29482.1 unnamed protein product [Mus musculus] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR007330 EMBL-EBI MIT 1.2E-13
Sequence
Target Sequence 
>C. ELEGANS:185820_AT
gaacaacacttatcgcaacggacaaaccaatgcaagtgtctccagttatcaaaggaagtg
tagtttatatgcataaaggaacaaagacagtcgctaaagaagagattctgaaaaatattt
tggacacgaaaatggacaaaatcggagatatgggcgtttcgatgggaaagaaattggcag
atagtgcacaaagacgatttggagatggaaaaagtggaggactcgtatccggaaccattg
aaattcttggaggcggaatcactggtgttgccacagtttggatgagtttggaagatggtt
cccgtcatctatgccgaagtattgcgaatcaaactgtacagaacgtgaaactcaagtacg
gagacgatgcatcagataccactcatcatgctcttttcgctgccggacacggaacacttg
cagctgctcaactatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAACACTTATCGCAACGGACAA 54 353 887 Antisense
ACCAATGCAAGTGTCTCCAGTTATC 389 85 912 Antisense
GAGATATGGGCGTTTCGATGGGAAA 319 397 1031 Antisense
AGTGGAGGACTCGTATCCGGAACCA 625 55 1099 Antisense
GAGGCGGAATCACTGGTGTTGCCAC 440 403 1136 Antisense
GAGTTTGGAAGATGGTTCCCGTCAT 295 399 1170 Antisense
TTCCCGTCATCTATGCCGAAGTATT 268 697 1185 Antisense
GTACGGAGACGATGCATCAGATACC 378 459 1242 Antisense
ATCAGATACCACTCATCATGCTCTT 601 27 1257 Antisense
TTTCGCTGCCGGACACGGAACACTT 560 667 1281 Antisense
GAACACTTGCAGCTGCTCAACTATG 567 351 1298 Antisense
Sequence Source Affymetrix Proprietary Database