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[185819_at]

Description F21C10.1 /REP_DB=WormBase Gene ID /WP=CE07116 /TR=Q19669 /GB=AAA97979.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 48
(-1.5)
A 		25.6
(-3)
A 		46.3
(-1.6)
A 		114.2
(3)
A 		89
B 66.9
(3)
P 		61
(1.4)
A 		53.5
(-0.6)
A 		44.6
(-3)
P 		22
C 73.5
(-0.9)
P 		48.8
(-3)
A 		53.8
(-2.6)
A 		120.2
(3)
P 		71
avr 62.8
(-0.8) 		45.1
(-3) 		51.2
(-2.2) 		93
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 61.6
(3)
A 		58.5
(2.4)
A 		36.5
(-2)
A 		36.1
(-2)
A 		31.3
(-3)
A 		32.9
(-2.7)
A 		30
B 47.9
(0.8)
A 		73.3
(3)
A 		40.1
(0.2)
A 		16.3
(-1.9)
A 		57.8
(1.7)
A 		2.8
(-3)
A 		71
C 17.7
(-2.9)
A 		63.1
(3)
A 		55.2
(2)
A 		36.4
(-0.5)
A 		28.6
(-1.5)
A 		17.2
(-3)
A 		46
avr 42.4
(0.1) 		65
(3) 		43.9
(0.3) 		29.6
(-1.5) 		39.2
(-0.3) 		17.6
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17.5
(3)
A 		5.6
(-3)
A 		12.1
(0.3)
A 		16.7
(2.6)
A 		12
B 21.3
(3)
P 		15.1
(-0.2)
A 		12.4
(-1.5)
A 		9.5
(-3)
P 		12
C 24.3
(3)
P 		14
(-3)
A 		18.8
(-0.2)
A 		20.3
(0.7)
P 		10
avr 21
(3) 		11.6
(-3) 		14.4
(-1.2) 		15.5
(-0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.4
(-1.4)
A 		20.8
(3)
A 		7.9
(-3)
A 		9.1
(-2.4)
A 		9.4
(-2.3)
A 		8
(-3)
A 		13
B 16.7
(1)
A 		24.4
(3)
A 		9.7
(-0.8)
A 		4.3
(-2.2)
A 		23.5
(2.8)
A 		1
(-3)
A 		23
C 6.6
(-2.6)
A 		19.3
(3)
A 		14
(0.6)
A 		7.3
(-2.3)
A 		9.2
(-1.5)
A 		5.8
(-3)
A 		14
avr 11.6
(-0.6) 		21.5
(3) 		10.5
(-1) 		6.9
(-2.3) 		14
(0.3) 		4.9
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185819_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11375
Sequence Type Exemplar sequence
Representative Public ID F21C10.1 NCBI
Target Description F21C10.1 /REP_DB=WormBase Gene ID /WP=CE07116 /TR=Q19669 /GB=AAA97979.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072967 NCBI Caenorhabditis elegans F21C10.1 (F21C10.1) mRNA, complete cds. 11/11 None
F21C10.1 ENSEMBL cdna:known chromosome:CEL140:V:9134970:9135861:1 gene:F21C10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9134970-9135862(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C10.1
Entrez Gene 184763 Entrez gene
SwissProt Q19669 EMBL-EBI
WormBase CE07116 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97979 Hypothetical protein F21C10.1 [Caenorhabditis elegans] ref|NP_505368.1| F21C10.1 [Caenorhabditis elegans] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 4.8E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505368.1 1 124-146
F21C10.1 1 124-146
Sequence
Target Sequence 
>C. ELEGANS:185819_AT
agtcgtcttttctggagttcattaattttcttttgctttctaagaaacacaaaaatcgac
ggttctgtaggtaactgggctaaatcatcaactaatagtaaggaacctcagcgatcgaat
ttgagtattgatttttgtaaacacgtgttccacgggcccttatccaaaacatcattttca
tactccgaagagactaaaatgtatgttatcacatctcccgataatccactaaattacata
attgattccaagagcgaagaacttaacaaagtaatatttgacaataacaccaagccatgg
aggctgctcttcgaatgtgacgaaagcctgtcttgttgcgaattggagtgttgtgacctt
aaaagagcatttgttgcattggtagtgctattgatcgtcggtgtgtgcggactaatatta
atgtgtttgagtgcgaagtggagatcggaatacaacaggaagaaagctctgcttcgaaat
tttcaggttgtgtacagatatcagagcaatattcctccacctcaagctttgccattgcca
gaaactcagcaatacgtcaatcctcccaataattctattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGTCTTTTCTGGAGTTCATTAA 526 7 16 Antisense
GTAAGGAACCTCAGCGATCGAATTT 661 459 113 Antisense
ACGGGCCCTTATCCAAAACATCATT 134 91 167 Antisense
TCACATCTCCCGATAATCCACTAAA 431 627 224 Antisense
CCATGGAGGCTGCTCTTCGAATGTG 139 271 310 Antisense
GACGAAAGCCTGTCTTGTTGCGAAT 414 379 334 Antisense
GGTAGTGCTATTGATCGTCGGTGTG 261 503 396 Antisense
TATCAGAGCAATATTCCTCCACCTC 64 661 514 Antisense
CAAGCTTTGCCATTGCCAGAAACTC 54 187 538 Antisense
GAAACTCAGCAATACGTCAATCCTC 196 357 556 Antisense
GTCAATCCTCCCAATAATTCTATTT 616 463 571 Antisense
Sequence Source Affymetrix Proprietary Database