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[185818_at]

Description T17A3.10 /REP_DB=WormBase Gene ID /WP=CE19587 /TR=O76697 /GB=AAC26956.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.1
(-3)
A 		14
(3)
A 		7.3
(-0.7)
A 		8.1
(-0.2)
A 		11
B 2.9
(-3)
A 		8.9
(2.3)
A 		7.1
(0.7)
A 		9.7
(3)
A 		7
C 12.2
(3)
A 		7.5
(-0.5)
A 		4.1
(-3)
A 		8.6
(0.3)
A 		8
avr 6.1
(-3) 		10.1
(3) 		6.2
(-2.9) 		8.8
(1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 22.4
(-0.7)
A 		5.3
(-2.9)
A 		4.6
(-3)
A 		6.7
(-2.7)
A 		32.2
(0.5)
A 		51.6
(3)
A 		47
B 7.3
(-2.3)
A 		4.2
(-2.7)
A 		5.2
(-2.6)
A 		1.9
(-3)
A 		2.8
(-2.9)
A 		49.4
(3)
A 		48
C 7.4
(-2.4)
A 		6.2
(-2.6)
A 		5
(-2.8)
A 		12.2
(-1.7)
A 		3.9
(-3)
A 		41.5
(3)
A 		38
avr 12.4
(-1.9) 		5.2
(-3) 		4.9
(-3) 		6.9
(-2.7) 		13
(-1.9) 		47.5
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(-3)
A 		3
(3)
A 		1.9
(-0.5)
A 		1.2
(-2.7)
A 		2
B 0.9
(-3)
A 		2.2
(3)
A 		1.7
(0.7)
A 		2.1
(2.5)
A 		1
C 4.1
(3)
A 		2.1
(-1.4)
A 		1.4
(-3)
A 		1.4
(-3)
A 		3
avr 2
(0) 		2.4
(3) 		1.7
(-2.3) 		1.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.1
(-1.4)
A 		1.9
(-2.5)
A 		1
(-3)
A 		1.7
(-2.6)
A 		9.7
(1.5)
A 		12.6
(3)
A 		12
B 2.5
(-2.3)
A 		1.4
(-2.7)
A 		1.3
(-2.7)
A 		0.5
(-3)
A 		1.1
(-2.8)
A 		18.4
(3)
A 		18
C 2.8
(-2.3)
A 		1.9
(-2.7)
A 		1.3
(-3)
A 		2.4
(-2.5)
A 		1.3
(-3)
A 		13.9
(3)
A 		13
avr 3.1
(-2.2) 		1.7
(-2.8) 		1.2
(-3) 		1.5
(-2.9) 		4
(-1.8) 		15
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8114
Sequence Type Exemplar sequence
Representative Public ID T17A3.10 NCBI
Target Description T17A3.10 /REP_DB=WormBase Gene ID /WP=CE19587 /TR=O76697 /GB=AAC26956.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064760 NCBI Caenorhabditis elegans T17A3.10 (T17A3.10) mRNA, complete cds. 11/11 None
GENEFINDER00000008199 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:154474:156673:-1 11/11 None
T17A3.10 ENSEMBL cdna:known chromosome:CEL140:III:154474:156673:-1 gene:T17A3.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008193 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:154473-156673(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17A3.10
Entrez Gene 188571 Entrez gene
SwissProt O76697 EMBL-EBI
WormBase CE19587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26956 Hypothetical protein T17A3.10 [Caenorhabditis elegans] ref|NP_497161.1| T17A3.10 [Caenorhabditis elegans] 0.0
blast AAC68793 Hypothetical protein F40G9.8 [Caenorhabditis elegans] ref|NP_497164.1| F40G9.8 [Caenorhabditis elegans] 3.0E-57
blast CAA91990 Hypothetical protein F59F3.1 [Caenorhabditis elegans] ref|NP_509836.1| VEGF (vascular endothelial growth factor) Receptor family member (ver-3) [Caenorhabditis elegans] 2.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497161.1 1 308-330
T17A3.10 1 308-330
GENEFINDER00000008199 1 308-330
Sequence
Target Sequence 
>C. ELEGANS:185818_AT
aatttgttctgtgcaataccccactctgcaatcaattggaaagtttcctggaggttagag
aactcaaactccacgtccgatctgtcagtcacaacattaatcgatggaaattcaaagtac
catgtgacaactgtgaaaaacatcacaaaatctggagtatacacatgcgttattgaagcc
gacaagtttaaagaaagaagacagctcctggaaactgtgataaaggtgaagccagcttcc
actaggcctgagccaataaagtcttccaaaatggcaatacccaattgcaaaagctcaatt
gaaattgaaatccagtgcaatataaccggtcaccccttacctgaatacagttgggtcact
gatgaaagctctgggagcaccttgacaatctctgaggactctggagtattccagtgcatt
gattccaaaaatcgatatgttgaagttaacgtcacaggatcccatagaaaagctctgggt
ttttatataattgtggctttattgatgagtgttacagttggagtttgcgtttttctgatc
tcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGTTCTGTGCAATACCCCACT 539 173 460 Antisense
TAGAGAACTCAAACTCCACGTCCGA 575 651 515 Antisense
ACGTCCGATCTGTCAGTCACAACAT 247 95 532 Antisense
AGGTGAAGCCAGCTTCCACTAGGCC 485 57 683 Antisense
AGGCCTGAGCCAATAAAGTCTTCCA 514 53 703 Antisense
CAGTGCAATATAACCGGTCACCCCT 241 207 772 Antisense
GGTCACTGATGAAAGCTCTGGGAGC 678 503 813 Antisense
CTGGGAGCACCTTGACAATCTCTGA 339 239 830 Antisense
GAGTATTCCAGTGCATTGATTCCAA 435 399 863 Antisense
GAAGTTAACGTCACAGGATCCCATA 608 333 901 Antisense
GGAGTTTGCGTTTTTCTGATCTCAG 682 517 979 Antisense
Sequence Source Affymetrix Proprietary Database