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[185817_at]

Description C02B10.4 /REP_DB=WormBase Gene ID /WP=CE16801 /TR=O44444 /GB=AAB92019.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 87      6grp_total > 89      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 670
1 2 3 4 range
A 1223.7
(2.8)
P 		1169.8
(1.9)
P 		1235.6
(3)
P 		876.1
(-3)
P 		360
B 1156.2
(0.3)
P 		1211.2
(0.9)
P 		1392.5
(3)
P 		867.6
(-3)
P 		525
C 1229.4
(2.2)
P 		1311.4
(3)
P 		1232.9
(2.2)
P 		722.6
(-3)
P 		589
avr 1203.1
(1.9) 		1230.8
(2.3) 		1287
(3) 		822.1
(-3) 		465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1096
1 2 3 4 5 6 range
A 1074.2
(-1.1)
P 		1090.8
(-1)
P 		741
(-3)
P 		884
(-2.2)
P 		1129.3
(-0.8)
P 		1792.6
(3)
P 		1052
B 982.7
(-0.4)
P 		828
(-1.8)
P 		697
(-3)
P 		945.9
(-0.7)
P 		1350.1
(3)
P 		1259.9
(2.2)
P 		653
C 1165.6
(0.3)
P 		790.7
(-3)
P 		932.5
(-1.7)
P 		878.1
(-2.2)
P 		1321.5
(1.7)
P 		1471.3
(3)
P 		681
avr 1074.2
(-0.6) 		903.2
(-2.1) 		790.2
(-3) 		902.7
(-2.1) 		1267
(1) 		1507.9
(3) 		718
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 445.6
(3)
P 		253.9
(-0.6)
P 		323
(0.7)
P 		128.2
(-3)
P 		317
B 368.7
(3)
P 		299.1
(0.7)
P 		322.7
(1.5)
P 		184.9
(-3)
P 		184
C 407
(2.6)
P 		377
(2)
P 		429.7
(3)
P 		121.8
(-3)
P 		308
avr 407.1
(3) 		310
(0.8) 		358.5
(1.9) 		145
(-3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 198
(-2.2)
P 		387.9
(1.9)
P 		161.4
(-3)
P 		224.2
(-1.6)
P 		340.8
(0.9)
P 		436.4
(3)
P 		275
B 341.9
(-0.3)
P 		275.6
(-1.3)
P 		169.3
(-3)
P 		250.5
(-1.7)
P 		548.5
(3)
P 		469.8
(1.8)
P 		379
C 432.1
(1.9)
P 		241.3
(-1.8)
P 		237.3
(-1.8)
P 		176.6
(-3)
P 		427.6
(1.8)
P 		492.5
(3)
P 		316
avr 324
(-0.1) 		301.6
(-0.6) 		189.3
(-3) 		217.1
(-2.4) 		439
(2.4) 		466.2
(3) 		277
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10681
Sequence Type Exemplar sequence
Representative Public ID C02B10.4 NCBI
Target Description C02B10.4 /REP_DB=WormBase Gene ID /WP=CE16801 /TR=O44444 /GB=AAB92019.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068321 NCBI Caenorhabditis elegans C02B10.4 (C02B10.4) mRNA, complete cds. 11/11 None
SNAP00000004591 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5091589:5092564:1 11/11 None
GENEFINDER00000004594 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5091589:5092564:1 11/11 None
C02B10.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:5091574:5092788:1 gene:C02B10.4 11/11 None
C02B10.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:5091576:5092788:1 gene:C02B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5091594-5092570(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B10.4
Entrez Gene 177283 Entrez gene
SwissProt O44444 EMBL-EBI
WormBase CE16801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92019 Hypothetical protein C02B10.4 [Caenorhabditis elegans] ref|NP_500722.1| C02B10.4 [Caenorhabditis elegans] 1.0E-111
blast CAE72739 Hypothetical protein CBG19980 [Caenorhabditis briggsae] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 7.7E-7
Sequence
Target Sequence 
>C. ELEGANS:185817_AT
gaacttttcttcagctcgaggatcaggaatcgatggtaaatggaaacgcgacatgttcca
gacagcaaatcgatctccaaagcaaaatttcacgaccaagaggcgagcacagacaaactt
tgtcactaaagccggtgccgcggcggcaggacttgccactaggaacatttcaacagcatc
aatccgtggaagaactgcgccggctgttgtcagagaaattcatactggaccatcgactct
tatcataaagaacttggcaaccactgtcacacaagaagatcttgaagagctcttcgaaca
atacgagccagagctcgtccagcttcactacggcccaacaggagagagtaatggatgcgc
tgatcttattgtccctcacgcacaagtcgctattattcaaaaagcactggaaggtgttct
gttggacggagagccgattgaagttctcgaagcaaacccaccgaagcaggtttctgtgtt
cgatcggatcaagaaggtttcacgaggaaacgatttcaaagcaaagaacatgcgcgtcgt
tgtcaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTTTCTTCAGCTCGAGGATCA 329 349 57 Antisense
GAAACGCGACATGTTCCAGACAGCA 135 359 99 Antisense
TAAAGCCGGTGCCGCGGCGGCAGGA 225 637 183 Antisense
TACTGGACCATCGACTCTTATCATA 281 647 279 Antisense
AAGAACTTGGCAACCACTGTCACAC 274 151 304 Antisense
CTTCACTACGGCCCAACAGGAGAGA 36 223 379 Antisense
TGGATGCGCTGATCTTATTGTCCCT 259 551 408 Antisense
CCCTCACGCACAAGTCGCTATTATT 580 259 429 Antisense
TGAAGTTCTCGAAGCAAACCCACCG 434 575 495 Antisense
CAGGTTTCTGTGTTCGATCGGATCA 384 207 523 Antisense
AGAACATGCGCGTCGTTGTCAAGTC 356 73 581 Antisense
Sequence Source Affymetrix Proprietary Database