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[185816_at]

Description F45E12.6 /REP_DB=WormBase Gene ID /WP=CE02742 /TR=Q20433 /GB=AAA68793.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 91      4grp_high_8_8 > 13      6grp_highest_nonorm > 81      6grp_total > 94      4grp_total > 11      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 520
1 2 3 4 range
A 210.4
(-1.8)
P 		229.4
(-1.6)
P 		113.3
(-3)
M 		602
(3)
P 		489
B 246.6
(-1.7)
P 		201.8
(-2.6)
P 		179.9
(-3)
M 		495.7
(3)
P 		316
C 247.3
(-1.7)
P 		177.1
(-2.5)
P 		139.3
(-3)
P 		633.2
(3)
P 		494
avr 234.8
(-1.7) 		202.8
(-2.2) 		144.2
(-3) 		577
(3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 315.3
(2.1)
P 		243.4
(-1.7)
P 		233.3
(-2.2)
P 		267.3
(-0.4)
P 		332.8
(3)
P 		218.8
(-3)
P 		114
B 262.4
(-1.1)
P 		204.8
(-3)
P 		214.1
(-2.7)
P 		275.7
(-0.6)
P 		382.7
(3)
P 		260.9
(-1.1)
P 		178
C 272.8
(1.5)
P 		232.3
(-0.3)
P 		168.7
(-3)
P 		296.1
(2.5)
P 		295.1
(2.4)
P 		308.1
(3)
P 		139
avr 283.5
(0.6) 		226.8
(-2) 		205.4
(-3) 		279.7
(0.4) 		336.9
(3) 		262.6
(-0.4) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 76.6
(1.8)
P 		49.8
(-0.9)
P 		29.6
(-3)
M 		88.1
(3)
P 		59
B 78.6
(0.5)
P 		49.8
(-2.2)
P 		41.7
(-3)
M 		105.6
(3)
P 		64
C 81.9
(0.4)
P 		50.9
(-2.8)
P 		48.6
(-3)
P 		106.8
(3)
P 		58
avr 79
(0.9) 		50.2
(-2) 		40
(-3) 		100.2
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 58.1
(-2.1)
P 		86.6
(1.3)
P 		50.8
(-3)
P 		67.8
(-0.9)
P 		100.4
(3)
P 		53.3
(-2.7)
P 		50
B 91.3
(-0.7)
P 		68.2
(-2.1)
P 		52
(-3)
P 		73
(-1.8)
P 		155.5
(3)
P 		97.3
(-0.4)
P 		104
C 101.1
(2.8)
P 		70.9
(-0.2)
P 		42.9
(-3)
P 		59.6
(-1.3)
P 		95.5
(2.2)
P 		103.2
(3)
P 		60
avr 83.5
(0.1) 		75.2
(-0.7) 		48.6
(-3) 		66.8
(-1.4) 		117.1
(3) 		84.6
(0.2) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4783
Sequence Type Exemplar sequence
Representative Public ID F45E12.6 NCBI
Target Description F45E12.6 /REP_DB=WormBase Gene ID /WP=CE02742 /TR=Q20433 /GB=AAA68793.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063129 NCBI Caenorhabditis elegans F45E12.6 (F45E12.6) mRNA, complete cds. 11/11 None
SNAP00000037601 ENSEMBL cdna:SNAP chromosome:CEL140:II:7313842:7314098:-1 11/11 None
GENEFINDER00000037606 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7313842:7314110:-1 11/11 None
F45E12.6 ENSEMBL cdna:known chromosome:CEL140:II:7313842:7314098:-1 gene:F45E12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7313838-7314095(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45E12.6
Entrez Gene 185804 Entrez gene
SwissProt Q20433 EMBL-EBI
WormBase CE02742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68793 Hypothetical protein F45E12.6 [Caenorhabditis elegans] ref|NP_495530.1| F45E12.6 [Caenorhabditis elegans] 1.0E-24
blast CAE67595 Hypothetical protein CBG13137 [Caenorhabditis briggsae] 9.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037606 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185816_AT
ttatcttgctcctaaccatttacatctcaacatcgtccgcatttccatcgcctcttgtca
atagagaatctcgtgcgctggcaccgtccgtcgagtcatggtgcatcttttacccagaaa
aatgccgcatgctgagattcgctggaacacacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCTTGCTCCTAACCATTTACAT 264 679 32 Antisense
CCTAACCATTTACATCTCAACATCG 316 267 42 Antisense
ACCATTTACATCTCAACATCGTCCG 578 85 46 Antisense
TTTCCATCGCCTCTTGTCAATAGAG 583 669 73 Antisense
CCATCGCCTCTTGTCAATAGAGAAT 582 271 76 Antisense
AATAGAGAATCTCGTGCGCTGGCAC 136 173 91 Antisense
GAGTCATGGTGCATCTTTTACCCAG 330 399 124 Antisense
CATGGTGCATCTTTTACCCAGAAAA 152 209 128 Antisense
TTTACCCAGAAAAATGCCGCATGCT 174 673 140 Antisense
AAAAATGCCGCATGCTGAGATTCGC 605 127 149 Antisense
GCTGAGATTCGCTGGAACACACAAA 245 297 162 Antisense
Sequence Source Affymetrix Proprietary Database